Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATCSLD4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38190 1836 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT3G03050 1606 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1571 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT2G33100 1337 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G02730 1324 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT1G32180 1145 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT2G25540 777 / 0 CESA10 cellulose synthase 10 (.1) AT5G05170 777 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G09870 774 / 0 CESA5 cellulose synthase 5 (.1) AT5G17420 768 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G170000 [exp] 2025 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.019G049700 [exp] 1629 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.013G082200 [exp] 1622 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 1439 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G097100 [exp] 1434 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G177800 [exp] 1355 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.014G125100 [exp] 1347 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 1326 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.001G050200 [exp] 1324 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013851 [exp] 1843 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 1813 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 1761 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10009248 [exp] 1536 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10038008 [exp] 1425 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10010024 [exp] 1345 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10030453 [exp] 1308 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10002134 [exp] 1276 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10000755 [exp] 1271 / 0 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Lus10011736 [exp] 1201 / 0 AT2G33100 1508 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03552 [poplar] [flax] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Potri.004G208800.1 pacid=42793920 polypeptide=Potri.004G208800.1.p locus=Potri.004G208800 ID=Potri.004G208800.1.v4.1 annot-version=v4.1 ATGGCATCTCTGTCTTCCCAACCATCCAAGAAGGGCATACGTAGCCCAGCTGGGAACACGGCCAACAACAACAGCTCCCAGCAGGGAAATCGTGGTTCCA CCGGCCAAACTGTCAAATTCGCTAGACGAACTTCAAGCGGTCGCTATGTTAGTCTATCAAGAGAAGACCTTGATATTTCTGGAGAACTATCGGGAGATTA CACGAACTATACGGTGCAGATTCCCTCCACACCTGACAATCAGCCAATGGACACGTCCGTGGCGGTCAAGGCCGAAGAGCAATATGTTTCCAATTCTCTT TTTACAGGCGGGTTCAATAGCGTTACGCGTGCGCATCTCATGGACAAGGTGATAGATTCGGAGGTGTCTCATCCTCAGATGGCTGGTGCCAAGGGCTCTT CGTGTGCAATGCATGCTTGCGATGGCAAGGTCATGAAGGATGAGAGAGGACATGATGTCATACCTTGTGAATGCAGGTTCAAGATTTGCAGGGATTGCTA TATGGACGCCCAAAAAGATACTGGTTTATGTCCAGGGTGCAAGGAGCCATACAAGGTGGGTGATTACGAGGATGAAATACCAAATTTTTCCAGTGGAGCA CTGCCATTGCCACCTCCAAGTAAAGGAGGTGATCACAATAACATGACAATGACGAAGAGAAACCAAAATGGAGATTTCGATCACAACAGGTGGTTGTTTG AGACACAAGGTACTTACGGCTATGGGAATGCCTTTTGGCCCCAAGATGACATGTATGGCGATGATGGCGATGAAGGGTTTCCGGGTGGCATGTTAGAAAA TATGGATAAGCCATGGAAGCCCCTCAGTCGTGAGCAGCCAATCTCCAATGCCATCATCAGCCCTTACAGGTTGCTGATTGTGGTTCGACTGGTTGTGCTG GGTTTCTTCTTGCATTGGAGAATAATGCATCCAAATGAGGACGCAAGATGGTTGTGGGGCATGTCAGTGGTTTGTGAAGTATGGTTTGCTTTCTCATGGA TCCTGGATATAATTCCCAAACTTTCTCCTATCAACCGGTTCACTGATCTTGAGGTCCTCCGTGACAAGTTTGACATGCCGTCGCCTTCCAATCCCACAGG CAGATCTGATCTCCCTGGTATTGACCTCTTTGTGTCCACTGCTGATCCTGATAAAGAGCCACCACTTGTCACTGCCAACACTATCCTTTCCATACTCTCG GTGGATTATCCTGTAGAGAAGGTGGCATGCTATATCTCTGATGATGGAGGTGCGCTCCTCACTTTTGAGGCAATGGCTGAGGCAGCAAGCTTTGCTGATT TGTGGGTTCCATTCTGTCGAAAACATAATATTGAGCCAAGGAACCCTGAAACCTACTTCAGCCTAAAAATTGATCCAACTAAGAACAAGAGCAGGATTGA TTTTGTCAAGGATAGAAGGAAGATGAAAAGGGAGTATGATGAATTCAAGGTGAGGATCAATGGGCTTCCAGACTCCATTAGGAGGAGATCAGATGCTTTC AATGCAAGAGAGGAAATGAAGATGTTGAAGCACATGAGGGAGAGCGCCGGAGGTGATCCTTTGGAGCCAATAAAGGTCCCGAAAGCTACATGGATGGCTG ATGGCACCCATTGGCCTGGAACTTGGGCCTTCCCAGCTGCCGAACATTCCAAAGGTGACCACGCTGGAATTCTTCAGGTGATGTTGAAGCCTCCTAGCCC TGACCCACTGATGGGAGGTGCGGATGATAAGATGATAGACTTTACAGATGTGGACATACGACTACCAATGTTTGTGTATGTCTCACGAGAAAAGAGGCCA GGCTATGACCATAACAAGAAAGCTGGTGCCATGAATGCTCTTGTAAGAGCATCTGCCATTCTATCCAATGGTCCATTCATTCTCAACTTGGATTGCGATC ACTACTTCTACAACTGCAAAGCTATCAGGGAAGGAATGTGCTTCATGATGGACAGGGGTGGCGAGAATATCTGCTATATACAGTTTCCCCAGAGATTTGA AGGCATTGATCCTTCTGATAGATACGCTAATCGCAATACTGTGTTTTTTGATGGAAACATGCGTGCCCTTGATGGTGTTCAGGGCCCGGTTTATGTTGGA ACGGGTTGCATGTTTAGAAGATTTGCATTATATGGATTTGATCCACCGAATACAAGTAAGACCGAGGAAAAGAAAGAAGCAGAGACACTTCCCTTAAGAG CTACCGACTTCGATCCTGATCTTGATTTCAATCTGCTACCCAAGCGGTTTGGGAATTCTACAATGCTGTCTGAATCTATTCCTATTGCCGAGTTCCAAGG CCGCCCTTTAGCTGATCATCCCGCTGTCAAGTATGGACGTCCTCCTGGTGCTTTGAGGGTCTCTCGTGAACCACTTGATGCCGCTACAGTTGCTGAAGCC GTTTCTGTCATTTCTTGCTGGTACGAGGACAAGACTGAATGGGGGGACCGAGTGGGTTGGATTTATGGTTCAGTCACGGAAGATGTTGTGACTGGCTATC GGATGCACAACCGTGGCTGGCGCTCTGTCTATTGCATAACCAAGCGTGATGCTTTTCGTGGCTCAGCTCCTATTAACCTTACTGACCGTCTCCACCAGGT GCTTCGTTGGGCCACTGGCTCTGTTGAGATTTTCTTTTCCAGAAACAATGCCTTTTTGGCCACTAGGCGTCTCAAAATCCTCCAACGCCTTGCTTACCTT AATGTTGGCATATACCCATTCACCTCGATTTTCTTGATCGTCTATTGCTTTCTCCCTGCACTCTCTCTTTTTTCCGGATTCTTCATTGTCCAAACCCTGG ACATCGCATTTTTAATCTACCTCCTACTTATAACTATTTGCCTCGTCCTTCTTGCCATTCTAGAGGTGAAGTGGTCTGGTATAGAGTTGGAAGAGTGGTG GAGGAACGAACAGTTCTGGCTTATCTCTGGAACCAGTGCCCACTTTGCTGCTGTCATGCAAGGCCTTCTCAAGGTGATTGCAGGAATTGAGATATCTTTC ACATTGACTTCCAAGTCTGCAGGAGATGACGTTGACGATATATATGCAGACCTGTATCTCGTAAAGTGGACATCCTTGATGATTCCACCCATTGTGATTG CCATGACAAACATGATTGCCATGGCCTTTGCTTTCATAAGGACGATTTATAGCACAGTTCCGCAGTGGAGTAAGTTTGTTGGCGGAGCTTTCTTTAGCTT CTGGGTGCTGGCTCATTTATATCCTTTTGCCAAGGGCTTGATGGGAAGGAGGAGAAAGACCCCAACCATCGTGTTTGTTTGGTCCGGTCTCATCGCCATT ACTATCTCTTTGCTATGGATTGCCATTAGCCCACCAAAGACAACCGGAACAGCTGATGGAGCTGGGGGAGGGTTTCAGTTCCCTTGA
AA sequence Show only first row Show all	>Potri.004G208800.1 pacid=42793920 polypeptide=Potri.004G208800.1.p locus=Potri.004G208800 ID=Potri.004G208800.1.v4.1 annot-version=v4.1 MASLSSQPSKKGIRSPAGNTANNNSSQQGNRGSTGQTVKFARRTSSGRYVSLSREDLDISGELSGDYTNYTVQIPSTPDNQPMDTSVAVKAEEQYVSNSL FTGGFNSVTRAHLMDKVIDSEVSHPQMAGAKGSSCAMHACDGKVMKDERGHDVIPCECRFKICRDCYMDAQKDTGLCPGCKEPYKVGDYEDEIPNFSSGA LPLPPPSKGGDHNNMTMTKRNQNGDFDHNRWLFETQGTYGYGNAFWPQDDMYGDDGDEGFPGGMLENMDKPWKPLSREQPISNAIISPYRLLIVVRLVVL GFFLHWRIMHPNEDARWLWGMSVVCEVWFAFSWILDIIPKLSPINRFTDLEVLRDKFDMPSPSNPTGRSDLPGIDLFVSTADPDKEPPLVTANTILSILS VDYPVEKVACYISDDGGALLTFEAMAEAASFADLWVPFCRKHNIEPRNPETYFSLKIDPTKNKSRIDFVKDRRKMKREYDEFKVRINGLPDSIRRRSDAF NAREEMKMLKHMRESAGGDPLEPIKVPKATWMADGTHWPGTWAFPAAEHSKGDHAGILQVMLKPPSPDPLMGGADDKMIDFTDVDIRLPMFVYVSREKRP GYDHNKKAGAMNALVRASAILSNGPFILNLDCDHYFYNCKAIREGMCFMMDRGGENICYIQFPQRFEGIDPSDRYANRNTVFFDGNMRALDGVQGPVYVG TGCMFRRFALYGFDPPNTSKTEEKKEAETLPLRATDFDPDLDFNLLPKRFGNSTMLSESIPIAEFQGRPLADHPAVKYGRPPGALRVSREPLDAATVAEA VSVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCITKRDAFRGSAPINLTDRLHQVLRWATGSVEIFFSRNNAFLATRRLKILQRLAYL NVGIYPFTSIFLIVYCFLPALSLFSGFFIVQTLDIAFLIYLLLITICLVLLAILEVKWSGIELEEWWRNEQFWLISGTSAHFAAVMQGLLKVIAGIEISF TLTSKSAGDDVDDIYADLYLVKWTSLMIPPIVIAMTNMIAMAFAFIRTIYSTVPQWSKFVGGAFFSFWVLAHLYPFAKGLMGRRRKTPTIVFVWSGLIAI TISLLWIAISPPKTTGTADGAGGGFQFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Potri.004G208800 [exp]	0	1	Pt-ATCSLD4.2
AT3G25910			Protein of unknown function (D...		Potri.003G060800 [exp]	13.82	0.7717
ATMG00310		ATMG00310.1, OR...	RNA-directed DNA polymerase (r...		Potri.012G064850 [exp]	37.94	0.7452
AT5G14990			unknown protein		Potri.010G222200 [exp]	47.41	0.7337
					Potri.005G134850 [exp]	53.47	0.7240
					Potri.014G093150 [exp]	55.96	0.7244
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Potri.017G053801 [exp]	59.17	0.7159
					Potri.010G023150 [exp]	61.31	0.5734
AT1G43760			DNAse I-like superfamily prote...		Potri.014G188801 [exp]	62.49	0.7237
AT3G54940			Papain family cysteine proteas...		Potri.010G228400 [exp]	75.94	0.7030
AT4G17565			F-box family protein with a do...		Potri.004G134900 [exp]	79.96	0.7095

Compare expression of checked genes

Potri.004G208800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.