Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38180 1164 / 0 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT2G27110 581 / 0 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT4G38170 570 / 0 FRS9 FAR1-related sequence 9 (.1) AT4G15090 441 / 7e-143 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 432 / 3e-139 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT5G18960 409 / 6e-131 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT3G06250 407 / 2e-130 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT1G76320 403 / 1e-129 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT4G19990 377 / 4e-119 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT2G32250 348 / 6e-108 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G170100 [exp] 1405 / 0 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.011G145800 [exp] 1058 / 0 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.005G257600 [exp] 907 / 0 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1) Potri.004G209100 [exp] 660 / 0 AT4G38170 716 / 0.0 FAR1-related sequence 9 (.1) Potri.009G158400 [exp] 629 / 0 AT2G27110 1138 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.004G196300 [exp] 621 / 0 AT2G27110 1115 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.008G011800 [exp] 603 / 0 AT2G27110 947 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.003G110300 [exp] 491 / 3e-161 AT4G15090 799 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.006G020700 [exp] 459 / 8e-150 AT3G22170 1184 / 0.0 far-red elongated hypocotyls 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 345 / 1e-109 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10022979 [exp] 110 / 5e-28 AT4G38180 85 / 8e-20 FAR1-related sequence 5 (.1) Lus10013855 [exp] 71 / 1e-14 AT4G38170 89 / 5e-22 FAR1-related sequence 9 (.1) Lus10026854 [exp] 55 / 1e-07 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10020226 [exp] 47 / 3e-05 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10023137 [exp] 43 / 0.0002 AT5G18960 46 / 3e-06 FAR1-related sequence 12 (.1) Lus10026732 [exp] 42 / 0.0002 AT3G07500 88 / 2e-22 Far-red impaired responsive (FAR1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0274 [poplar] [flax] PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.004G209000.1 pacid=42795566 polypeptide=Potri.004G209000.1.p locus=Potri.004G209000 ID=Potri.004G209000.1.v4.1 annot-version=v4.1 ATGGAAAACGAGGTACTTGAATTCGATATAGGTTTAGGAAGTGGAGCTGATGATGATGATGATGATGATGCTGTTGACATCGATATTGACGACGATTTGC CTTCCACTCCTCCCCATCATCTTACCACTTCTCACAATTCTGCTTCCACTTCTGCTACTCGAATTTACCTTCCTGAGGGTGACCTTTCGGATCTTGAACC TTATGAGGGCATGGAATTCGAGTCCGAAGAGGCTGCCAAGGCCTTCTACAATTCCTACGCTAGGCGTGTTGGCTTTAGCACCCGTGTCAGCTCTTCCCGC CGTTCCAGGCGTGATGGAGCTATTATTCAGAGACAATTTGTGTGTGCCAAAGAGGGCTTTAGGAATTTGAATGAGAAGCGTACCAAGGATAGAGAGATCA AGCGCCCCCGTGTTATCACTAGAGTTGGTTGCAAAGCTTCCTTGTCTGTCAAAATGCAGGATTCTGGCAAATGGGTTGTCTCCAGTTTTGTTAGGGGACA TAATCATGAGTTGGTCCCTCCCGATCAGGTGCATTGCCTCCGTTCACACAGGCAAATATCTGGCCCTGCTAAGACCTTGATCGATACGTTGCAGGCTGCT GGAATGGGCCCTCGTAGGATTATGTCTGCCTTAATTAAGGAGTATGGTGGGATTAGCAAAGTTGGATTTACAGAGGTCGATTGCCGGAATTACATGAGGA ACAATCGTCAGAGAAGCATGGAAGGAGACATCCAGCTCCTTTTGGATTATTTGAGGCAAATGCAAAGTGAGAACCCCGATTTCTTTTATGCACTCCAGGG GGATGACGGTCAGTTTACGGGCAACGTGCTGTGGGCTGATCCAAGAGCCAGGGCAAACTACAGTTATTTTGGTGACACTGTTACTTTTGACACCACCTAC AGGTCCAACAGGTACCGCTTGCCCTTTGCGCCCTTCACTGGAGTGAACCATCATGGACAACCTGTTTTGTTCGGTTGTGCTTTCATATTGAATGAGACTG AAGCATCATTTGTTTGGCTGTTTCAGACGTGGCTTACAGCAATGTCTGGCCGTCATCCCCTGTCGATCACCACTGATCATGATGCAGTGATAAGATTGGC CATCATGCAGGTCTTCCCTGAGACCCGCCATCGGTTTTGCAAATGGCATATATTCAAGAAATGCCAGGAGAAGTTGTCCCATGTGTTACTCAAACATCCA ACTTTTGAGTCAGAGTTTCATAAATGTGTTAACTTGACCGAGTTGATCGAAGAATTTGAATCCTGTTGGTTGTCACTTGTTGATAGATATGAACTTCGGG ATCATGAGTGGCTTCAAACAATATATTCTGATCGCAGGCAGTGGGTCCCTGTGTATCTGCGGGATGCTTTTTTTGCTGAGATGTCTATAACCCAGCGAAG TGATAGCATGAACTCATACTTTGACGGTTACGTGAATGCTTCAACCAATCTGAACCATTTCTTTAAGCTGTATGAGAGAGCTATAGAGAGTCGGAATGAG AAAGAAGTTAAAGCAGATTATGATACAATGAACACAAACCCAGTTTTGAAGACCCCATCTCCAATGGAGAAACAAGCATCCGGGCTTTACACTAGAAAAT TGTTCGTGAGATTTCAAGAGGAGCTAGTTGGGACGTTAACTTTCATGGCATCTAAATCAGAAGATGATGGGGAGAGCATTACATACCAAGTTGCTAAGTA TGGGGAAGATCATAAAGCTTACCATGTTAAATTCAATGTTTTGGAGATGAAGGCGACTTGTAGCTGCCAGATGTTTGAGTTCTCTGGTCTTCTGTGCCGA CATGTGTTGACAGTCTTTAGAGTGACCAATGTCCTTACTCTCCCATCTCGTTACATTTTGAAACGATGGACAAGAAATGCCAAGAGCAATGTCATATTGG AAGAACGCCCTACTGATGTATATACCGGCTATCTTGAATCTCATACTGTTCGGTATAATACCCTACGCCATGAGGCCTTCAAATTTGTAGAGGAAGGATC CAAGTCCCTAGACACTTACAATGTGGCAATGGGTGTTCTGCAAGAGGCCACAACTAGAGTTGCACAAGCAACAAAGAATGAGGGGAGAGCTGGTGATGTC AATGGCCGTAATAAAGGGGACTCCGCAAGCAGTGGAATTAGGGCTAATTATACCAGCGGGAATCATCTGGGGATCTCTGGCCAACCTTTGTCTGAGGAGG ATATGGACAAGAAAATCCAAGAACTTAGAGATGAACTGGAGTATGCAAATCGAAAGTGCGAAGTCTACCGAGCTAACCTGCTTTCAGTTTTAAAAGACAT TGAGGATCATAAGCTACAATTGTCAATTAAAGTACAGAGCATAAAGATTAGTATGAAGGGTAGTATCTGA
AA sequence Show only first row Show all	>Potri.004G209000.1 pacid=42795566 polypeptide=Potri.004G209000.1.p locus=Potri.004G209000 ID=Potri.004G209000.1.v4.1 annot-version=v4.1 MENEVLEFDIGLGSGADDDDDDDAVDIDIDDDLPSTPPHHLTTSHNSASTSATRIYLPEGDLSDLEPYEGMEFESEEAAKAFYNSYARRVGFSTRVSSSR RSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRVITRVGCKASLSVKMQDSGKWVVSSFVRGHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAA GMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSMEGDIQLLLDYLRQMQSENPDFFYALQGDDGQFTGNVLWADPRARANYSYFGDTVTFDTTY RSNRYRLPFAPFTGVNHHGQPVLFGCAFILNETEASFVWLFQTWLTAMSGRHPLSITTDHDAVIRLAIMQVFPETRHRFCKWHIFKKCQEKLSHVLLKHP TFESEFHKCVNLTELIEEFESCWLSLVDRYELRDHEWLQTIYSDRRQWVPVYLRDAFFAEMSITQRSDSMNSYFDGYVNASTNLNHFFKLYERAIESRNE KEVKADYDTMNTNPVLKTPSPMEKQASGLYTRKLFVRFQEELVGTLTFMASKSEDDGESITYQVAKYGEDHKAYHVKFNVLEMKATCSCQMFEFSGLLCR HVLTVFRVTNVLTLPSRYILKRWTRNAKSNVILEERPTDVYTGYLESHTVRYNTLRHEAFKFVEEGSKSLDTYNVAMGVLQEATTRVAQATKNEGRAGDV NGRNKGDSASSGIRANYTSGNHLGISGQPLSEEDMDKKIQELRDELEYANRKCEVYRANLLSVLKDIEDHKLQLSIKVQSIKISMKGSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	0	1
AT5G05550	Trihelix		sequence-specific DNA binding ...		Potri.010G186200 [exp]	1.00	0.9277
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.009G158400 [exp]	1.41	0.9257
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.010G131400 [exp]	3.46	0.9179
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.019G036800 [exp]	3.87	0.9159
AT4G26450		WIP1	unknown protein		Potri.011G169200 [exp]	4.00	0.9007
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.016G131900 [exp]	5.65	0.9107
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.006G020700 [exp]	6.32	0.9082	Pt-FHY3.2
AT4G02715			unknown protein		Potri.005G211400 [exp]	7.87	0.8918
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.013G018700 [exp]	8.48	0.9099
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.001G291600 [exp]	8.60	0.8714

Compare expression of checked genes

Potri.004G209000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.