Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38170 716 / 0 FRS9 FAR1-related sequence 9 (.1) AT4G38180 618 / 0 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT2G27110 530 / 0 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT3G06250 353 / 7e-113 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT5G18960 353 / 8e-113 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT4G15090 343 / 1e-108 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 312 / 1e-96 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT1G76320 307 / 7e-96 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT4G19990 288 / 4e-88 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT1G52520 271 / 3e-82 FAR1_related FRS6 FAR1-related sequence 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G257600 [exp] 731 / 0 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1) Potri.011G145800 [exp] 675 / 0 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.004G209000 [exp] 655 / 0 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.009G170100 [exp] 644 / 0 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.004G196300 [exp] 548 / 0 AT2G27110 1115 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.009G158400 [exp] 546 / 0 AT2G27110 1138 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.008G011800 [exp] 522 / 3e-177 AT2G27110 947 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.008G199300 [exp] 357 / 8e-114 AT3G06250 985 / 0.0 FAR1-related sequence 7 (.1) Potri.003G110300 [exp] 354 / 5e-112 AT4G15090 799 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 307 / 1e-97 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10013855 [exp] 95 / 3e-23 AT4G38170 89 / 5e-22 FAR1-related sequence 9 (.1) Lus10022979 [exp] 63 / 2e-11 AT4G38180 85 / 8e-20 FAR1-related sequence 5 (.1) Lus10026732 [exp] 47 / 5e-06 AT3G07500 88 / 2e-22 Far-red impaired responsive (FAR1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.004G209100.3 pacid=42795439 polypeptide=Potri.004G209100.3.p locus=Potri.004G209100 ID=Potri.004G209100.3.v4.1 annot-version=v4.1 ATGAGTGGTGGCAGACCCAGGTCCCTCGGGGGTGGGGGCCAGCATCATGTCTTGGATTATTTAAAAAGAATGCAATCTGAGAATCCTGCTTTCTTTTATG CAACTCAACCCGACACTGATCACTCACCTGGAGGAGCAACCATATTCTGGGCTGATGCCACTGCCAGGATGAATTACAATTACTTTGGAGATACTCTTGT TTTCGATACTTCATACAGGACACACCGTTACAGGGTCCCGTTTGCCTCTTTCACGGGAATCAATCACCATGGCCAGCCTGTCTTGTTCGGCTGTGCTCTC ATTCTCAATGACTCTGAGTCGTCTTTCATTTGGCTTTTCCAAACTTGGCTTAGCGCAATGTCTGGTAAACAGCCTCTCTCTATCACAACTGATCCAGATC ACTTCATTCAGACCGCTGTATCACAAATTCTTCCTGAGACTCGCCATCGGTATTCTAAGCAGGGCATACTAAGAGAAACCCAAGAAAAACTGGCTCATAT CTATCGCTCTCATCCCATGTTTGAAACTGAATTTAAGAAGTGCATTAATGAGACTGAGACAATTGATGAGTTTGAATCTTCTTGGCAATCCCTTCTGCAA AGATACTACGTCATGGACAATGAATGGCTTCAGTCGATGTACAATGCTCGACAGCAATGGGTCACGGTTTATTTGAGAGACACTTTTTTTGGAGAGTTGT CAGTAACTGATGGAAGTGGAGGTTTAAACTCGTTCTTTGATGGATATGTGAGTGCATCAACCACCATACAAATGCTGATCAAACAATACGAAAAGGCTTT AGCAAGTTGGCATGAAAAGGAACTAAAAGCAGACTATGACACTACTAACACTACACCAGTTCTAAAGACACCTTCTCCTATGGAAAAACAAGCTGCTGGC CTCTACACTAGAAGAATATTCATGAAATTCCAAGATGAATTAGTTGAGACCCTTGCTAATCCTGCAACGAAAATTGACGATTCAGGAACCATCACCACCT ATCGCGTGGCTAAGTTTGGGGAAGAGCACAAAGCACACACTGTTTGTTTCAATTCTTTTGAGATGAAAGCTACTTGCAGCTGCCAGATGTTTGAATATTC TGGGATCATTTGTCGACACATATTAGCAGTTTTTAGAGCAAAAAATGTCCTCACACTTCCATCTCAATATGTATTGAAACGATGGACAACTAATGCCAAA AGCAGAGCTGTATTAGATGAAGGCGCTTCTGAATTGCCGAACGATTCTCGCGAGTCTTTAACCGTTCGCTATAACAACTTGCGCCAGGAAGCCATCAAAT ATGTTGAAGAAGGGGCAAAATCTATTCACATTTATAATGTGGCAATGGATGCTCTACAAGAAGCTGCTAAGAAAGTTTCTGATGTGAAGAATCAAGGCTC TGGAGGCACACAAGGTGGAACTCTGACAAATGGAAGTAGTCAAGAGCTTCATGTTGCTAAAGATAATTCATCGGCAACATTGCAGTCTGTGGATGAGAAG CAAAAGAAAATCCGTGAATTGACTGCTGAGTTGGAGGGTACCAACCAACGCTGTGAAGTGTACCGAGCAAACTTGCTAGCTGTTTTAAAAGATATGGAAG AACAGAAGTTAAAGCTTTCGGTGAAGGTGCAGAACGCAAGGCTGAGTTTGAAAGAATGA
AA sequence Show only first row Show all	>Potri.004G209100.3 pacid=42795439 polypeptide=Potri.004G209100.3.p locus=Potri.004G209100 ID=Potri.004G209100.3.v4.1 annot-version=v4.1 MSGGRPRSLGGGGQHHVLDYLKRMQSENPAFFYATQPDTDHSPGGATIFWADATARMNYNYFGDTLVFDTSYRTHRYRVPFASFTGINHHGQPVLFGCAL ILNDSESSFIWLFQTWLSAMSGKQPLSITTDPDHFIQTAVSQILPETRHRYSKQGILRETQEKLAHIYRSHPMFETEFKKCINETETIDEFESSWQSLLQ RYYVMDNEWLQSMYNARQQWVTVYLRDTFFGELSVTDGSGGLNSFFDGYVSASTTIQMLIKQYEKALASWHEKELKADYDTTNTTPVLKTPSPMEKQAAG LYTRRIFMKFQDELVETLANPATKIDDSGTITTYRVAKFGEEHKAHTVCFNSFEMKATCSCQMFEYSGIICRHILAVFRAKNVLTLPSQYVLKRWTTNAK SRAVLDEGASELPNDSRESLTVRYNNLRQEAIKYVEEGAKSIHIYNVAMDALQEAAKKVSDVKNQGSGGTQGGTLTNGSSQELHVAKDNSSATLQSVDEK QKKIRELTAELEGTNQRCEVYRANLLAVLKDMEEQKLKLSVKVQNARLSLKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38170		FRS9	FAR1-related sequence 9 (.1)		Potri.004G209100 [exp]	0	1
AT3G53560			Tetratricopeptide repeat (TPR)...		Potri.006G213600 [exp]	4.35	0.9014
AT4G33890			unknown protein		Potri.009G090500 [exp]	7.93	0.8415
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.003G120201 [exp]	10.48	0.8680
AT2G01410			NHL domain-containing protein ...		Potri.001G156300 [exp]	11.22	0.8787
AT2G16070		PDV2	plastid division2 (.1.2)		Potri.004G149900 [exp]	13.85	0.8249
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.010G131400 [exp]	15.09	0.8702
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Potri.001G170100 [exp]	15.65	0.8245
					Potri.006G239650 [exp]	18.97	0.8631
AT1G75420			UDP-Glycosyltransferase superf...		Potri.005G118800 [exp]	22.00	0.8264
AT4G31200			SWAP (Suppressor-of-White-APri...		Potri.006G279800 [exp]	23.91	0.8539

Compare expression of checked genes

Potri.004G209100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.