Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16050 278 / 1e-94 Cysteine/Histidine-rich C1 domain family protein (.1) AT1G20990 80 / 3e-17 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37820 76 / 4e-16 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37800 74 / 4e-15 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G43520 64 / 4e-12 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37810 60 / 1e-10 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44380 58 / 6e-10 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37780 58 / 8e-10 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G28270 56 / 4e-09 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44370 56 / 5e-09 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G170201 [exp] 325 / 4e-114 AT2G16050 165 / 3e-51 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.009G110500 [exp] 275 / 1e-93 AT2G16050 338 / 6e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.004G149500 [exp] 267 / 1e-90 AT2G16050 339 / 3e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.010G205100 [exp] 157 / 2e-47 AT2G16050 149 / 2e-44 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.010G205200 [exp] 152 / 2e-45 AT2G16050 159 / 3e-48 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.008G055200 [exp] 145 / 1e-42 AT2G16050 147 / 2e-43 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.010G204600 [exp] 141 / 4e-41 AT2G16050 151 / 7e-45 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.005G258800 [exp] 86 / 1e-19 AT1G20990 270 / 1e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.010G198200 [exp] 74 / 1e-15 AT2G37820 166 / 1e-49 Cysteine/Histidine-rich C1 domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017477 [exp] 256 / 1e-85 AT2G16050 340 / 4e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10028723 [exp] 78 / 1e-16 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10003919 [exp] 42 / 0.0001 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10037470 [exp] 43 / 0.0002 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [poplar] [flax] C1 PF03107 [poplar] [flax] C1_2 C1 domain
Representative CDS sequence Show only first row Show all	>Potri.004G209200.1 pacid=42794972 polypeptide=Potri.004G209200.1.p locus=Potri.004G209200 ID=Potri.004G209200.1.v4.1 annot-version=v4.1 ATGAAGATTAGTGACAGAGAAATCAGCCATCCCATCCACCCACAACACAAGCTAAAACTTGAATACACAGAAATCCCATTCACTTGTGATGGTTGCAAGG AAGCTGGCATTGGTCTAAAATACAGTTGCCGCCAGAAATATTGCAATGATCAATTTGACCTTCACAAGGTATGTGCTGTGGCGCCTCCTATCATCAACAA TTCCTTTTACAAAGAATGCGTTTTCGAATTTCACCATCACCCTCCAGGTGAGGAGAAGAGGGTATGCGATGCATGTAGAAATGAAGTTCTAGGCTTTGTC TACCACTGCAAGCGATGTGGATTTGATCTCCACCCTTGTTGTGCAAACCTCCCTCAAGTTCTAGACGATGGTGAGCACAATCTTTACCTGTGTCACAAGC TCTCCGGGGCATGTCATCGATGTGGGGGCAAAGGACCAGGGTGGTCTTACAGGTCTCGCTGCAAAACGTATAATCTTCATCTGTCATGTGTCAAGGAGTT GCTGGTGGAGAGCTGGGAAGCCATGTATCTCAAAGTGGATCAGAACAAGGTCAGAGAGATACAGACTAGGATCCCAAGCCTCAAGGTGACACTGGCAAAC CATCATGGAGGAGCTAGAGGTGGAAAGGTTAGGAAGTGCTGTCAGATGGCTGGTGGTGCCATTCGCCTTATTGTCTCAGCTATCCTGGGAGATCCTACAG CTATAATCGCTGCAGTCGTTGGGGGTTTCATATCCAAGTAA
AA sequence Show only first row Show all	>Potri.004G209200.1 pacid=42794972 polypeptide=Potri.004G209200.1.p locus=Potri.004G209200 ID=Potri.004G209200.1.v4.1 annot-version=v4.1 MKISDREISHPIHPQHKLKLEYTEIPFTCDGCKEAGIGLKYSCRQKYCNDQFDLHKVCAVAPPIINNSFYKECVFEFHHHPPGEEKRVCDACRNEVLGFV YHCKRCGFDLHPCCANLPQVLDDGEHNLYLCHKLSGACHRCGGKGPGWSYRSRCKTYNLHLSCVKELLVESWEAMYLKVDQNKVREIQTRIPSLKVTLAN HHGGARGGKVRKCCQMAGGAIRLIVSAILGDPTAIIAAVVGGFISK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.004G209200 [exp]	0	1
AT1G77700			Pathogenesis-related thaumatin...		Potri.001G210400 [exp]	1.41	0.9921
AT4G05430			Carbohydrate-binding X8 domain...		Potri.019G007800 [exp]	2.00	0.9919
AT4G05430			Carbohydrate-binding X8 domain...		Potri.019G012000 [exp]	3.00	0.9891
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.006G256700 [exp]	4.00	0.9871
					Potri.016G136800 [exp]	5.47	0.9819
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028600 [exp]	6.70	0.9524
AT1G63310			unknown protein		Potri.001G452900 [exp]	8.36	0.9830
AT5G35740			Carbohydrate-binding X8 domain...		Potri.006G016800 [exp]	8.36	0.9815
AT1G79480			Carbohydrate-binding X8 domain...		Potri.010G173500 [exp]	9.16	0.9761
					Potri.018G040000 [exp]	9.48	0.9800

Compare expression of checked genes

Potri.004G209200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.