Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06740 369 / 2e-118 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 350 / 6e-111 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 334 / 6e-105 RLK receptor lectin kinase (.1) AT3G53810 322 / 3e-100 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 320 / 2e-99 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 316 / 7e-98 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 308 / 4e-95 Concanavalin A-like lectin protein kinase family protein (.1) AT3G08870 299 / 2e-91 Concanavalin A-like lectin protein kinase family protein (.1) AT5G01550 293 / 4e-89 LECRKA4.2 lectin receptor kinase a4.1 (.1) AT1G70110 292 / 5e-89 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G455500 [exp] 604 / 0 AT5G06740 416 / 1e-136 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G146500 [exp] 593 / 0 AT5G06740 411 / 5e-135 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G193000 [exp] 399 / 5e-130 AT5G06740 688 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G045000 [exp] 398 / 1e-129 AT5G06740 702 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088680 [exp] 343 / 4e-108 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.001G262866 [exp] 342 / 8e-108 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 342 / 9e-108 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 342 / 1e-107 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 342 / 1e-107 AT2G37710 808 / 0.0 receptor lectin kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009423 [exp] 562 / 0 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1) Lus10028699 [exp] 556 / 0 AT5G06740 455 / 1e-151 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004166 [exp] 340 / 2e-107 AT5G06740 682 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10021060 [exp] 338 / 4e-107 AT5G06740 667 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 336 / 8e-106 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10003224 [exp] 335 / 4e-105 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 328 / 4e-102 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016257 [exp] 326 / 3e-101 AT5G06740 638 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10022662 [exp] 320 / 4e-99 AT5G01550 651 / 0.0 lectin receptor kinase a4.1 (.1) Lus10016507 [exp] 320 / 4e-99 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G209300.1 pacid=42796583 polypeptide=Potri.004G209300.1.p locus=Potri.004G209300 ID=Potri.004G209300.1.v4.1 annot-version=v4.1 ATGGCTGCCCAAAATCCATATTCGATCATCGCTCTCCTCATTATTATGTTATTCAACCTTGCACATCTAGCTTTCACAGACGACATGTCATCATTCAATT TTGACAGATTTGTTGATGATGATCATAAGAAGCTCCTGAGTTTCAGAGGCAATTCATCCATCTATCTTGAAGCTCTACAACTTACTCCTGAGACCCCCAA TGATGCTCATAGTTGGAAACAAAAAAATGCATCTGGCCGCATCATGTATCATAAACCTTTCAGGTTCTGGATCGGTGATGGTGGGGACGAGTACAGATTA GCCTCCTTCAACACCACCTTTGTCATTAACATTTACAGAGAAAGAGACTGGGAGGCTGGTAGTGGCCTGGCTTTTCTTATAGCTCCAAATGCTAGCATAC CCGAAGCAAGTTACGGGCAATATCTAGGCCTGACCAATGCCTCCACTGATGGTAACACTGCAAACCACTTTGTGGCTATAGAGTTTGACACGGAAAAGCA AGATTACATCGAAGATCCAGATCATAACCATATCGGGTTCAATATCAACTCCATTCGGTCAAAAAATGCCATCCCTCTAGACAAATATAACATCACACTC TCTCCTGATCCACCAGGAGTTAACTACACTGTTTGGGTTGATTATAACGGCACCTCCAAATTGATGCAGGTGTACATGGTGAAAGAAGGAAATCAAAAGC CTGGAGAGCCTCTCTTGAACGAGACCATAGACCTCAAAGAGTACCTGAAACAAGAATCCTACTTTGGTTTTGCTGCTTCCACTGGTGATCCACGGATTGA ATTAAACTGTGTGCTGAAATGGAGCTTACAGATAAATAATCAACCCGATGAGGAAAATGATGAGAAATGGTGGAAGATTGGTGCTGGGGTTTGTGTCTCA GTAGTGATGATAATCTTTATATTTGTGGTATGTAGAGTTGTTTTTGTGAGGAAAAAGAGATCAAAGGCAAGTCTAGAGGAGGCCACAGAGTTTGGTACTT ACATCTTGAAATGGTTGCCTGGGATGCCAAGAGAGTTCAAGTACAAGGAGTTGAAGAAGGCTACCAGCAATTTCCATGAAAGTATGAAGCTCGGGGAAGG AGGATTTGGGATCGTTTATAAAGGCGTCCTACTCCTCAATGATAAGGCTGATGATGGTACTACTACTACTACGACTACTGAAATTGCTGTCAAGAAATTC TCCAGAGACAGCATAAAAGGCAAAGATGATTTCTTGGCCGAGCTAACCATCATTCATCATCTTCGCCACAAAAATCTCGTCCGCTTAGTGGGGTGGTGCT ATGAGAAAGGAAAGCTTCTATTAGTTTATGATTTCATGCCAAATGGCAGCCTGGAGAAACACCTACAGAAGGGTCCAGAGCAGGACACTCTAAATTGGAA TCGTCGCTACAGGATACTTGTAGGGGTTGCATCGGCATTACATTACCTGCACAATGAGTATGACAAGAAAGTTGTCCACAGAGACCTCAAAACCAGCAAT ATCCTACTTGATGCGGACTTTAATTCCCGCCTAGGTGACTTTGGCCTTGCTCGCGCCTTGGAAAATGAGAAGAATTCATATAATGAGCTTGGGCTAGGTG GCGTTCCCGGTACCATGGGTTATGTTGCTCCAGAATGTTTCCACACGGGCAGGGCTACCCCTGAATCTGACGTGTTTGGTTTTGGGGTGGTGGTTCTTGA GGTTGTGTGTGGTAAAGGTCCAGGGACAAAGATCCGTCACAACCAGCATCTTTATTCTATGGTTGATTGGGTCTGGACCTTACATCGTGAGGGACGCATA CTAGAAGCCGTAGATGAAAACCTCGGTAACGATTTTGTGCACGACGAGGCTAATAGACTTTTACTTCTGGGATTGGCTTGTTCTCATCCTATCGACAGTG AAAGGCCTAAAACAGAGACCATAATCCAGATCGTATCAGGAACTTTGCCTCCGCCTCACGTACCTCCATTCAAGCCAGTCTTCACTTGGCCTAGCATGAG CACCACTGACAGCACAACTGGTTCGCTCTCCAGCATGACATCATCTTCTCGAAGTTACGCCAGAACACAAAGTGTAATCAAATTGCGGAGGACCACGTCA AGTCTCCAAGTTTAG
AA sequence Show only first row Show all	>Potri.004G209300.1 pacid=42796583 polypeptide=Potri.004G209300.1.p locus=Potri.004G209300 ID=Potri.004G209300.1.v4.1 annot-version=v4.1 MAAQNPYSIIALLIIMLFNLAHLAFTDDMSSFNFDRFVDDDHKKLLSFRGNSSIYLEALQLTPETPNDAHSWKQKNASGRIMYHKPFRFWIGDGGDEYRL ASFNTTFVINIYRERDWEAGSGLAFLIAPNASIPEASYGQYLGLTNASTDGNTANHFVAIEFDTEKQDYIEDPDHNHIGFNINSIRSKNAIPLDKYNITL SPDPPGVNYTVWVDYNGTSKLMQVYMVKEGNQKPGEPLLNETIDLKEYLKQESYFGFAASTGDPRIELNCVLKWSLQINNQPDEENDEKWWKIGAGVCVS VVMIIFIFVVCRVVFVRKKRSKASLEEATEFGTYILKWLPGMPREFKYKELKKATSNFHESMKLGEGGFGIVYKGVLLLNDKADDGTTTTTTTEIAVKKF SRDSIKGKDDFLAELTIIHHLRHKNLVRLVGWCYEKGKLLLVYDFMPNGSLEKHLQKGPEQDTLNWNRRYRILVGVASALHYLHNEYDKKVVHRDLKTSN ILLDADFNSRLGDFGLARALENEKNSYNELGLGGVPGTMGYVAPECFHTGRATPESDVFGFGVVVLEVVCGKGPGTKIRHNQHLYSMVDWVWTLHREGRI LEAVDENLGNDFVHDEANRLLLLGLACSHPIDSERPKTETIIQIVSGTLPPPHVPPFKPVFTWPSMSTTDSTTGSLSSMTSSSRSYARTQSVIKLRRTTS SLQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06740			Concanavalin A-like lectin pro...		Potri.004G209300 [exp]	0	1
AT1G78780			pathogenesis-related family pr...		Potri.005G188300 [exp]	2.23	0.9975
					Potri.015G125300 [exp]	2.44	0.9967
AT1G35210			unknown protein		Potri.005G161700 [exp]	3.00	0.9964
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374800 [exp]	3.60	0.9980
					Potri.001G091400 [exp]	4.47	0.9979
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374700 [exp]	6.00	0.9979
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374600 [exp]	7.48	0.9977
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.011G063000 [exp]	9.16	0.9955
AT4G27270			Quinone reductase family prote...		Potri.011G129400 [exp]	11.04	0.9923	FQR1.2
					Potri.006G106150 [exp]	11.53	0.9959

Compare expression of checked genes

Potri.004G209300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.