Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38150 315 / 3e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT5G03560 129 / 5e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G61990 107 / 4e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63630 102 / 4e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G61400 105 / 1e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G41170 105 / 1e-24 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 105 / 2e-24 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G46100 104 / 2e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 101 / 3e-23 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 101 / 4e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G050180 [exp] 112 / 5e-27 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G035700 [exp] 112 / 9e-27 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.009G170400 [exp] 103 / 2e-26 ND / Potri.005G046000 [exp] 110 / 5e-26 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 108 / 1e-25 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.017G131400 [exp] 108 / 1e-25 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G257300 [exp] 107 / 5e-25 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050300 [exp] 106 / 7e-25 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 106 / 8e-25 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013853 [exp] 319 / 2e-107 AT4G38150 304 / 2e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10026570 [exp] 319 / 4e-107 AT4G38150 303 / 5e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10024962 [exp] 102 / 2e-23 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027974 [exp] 102 / 2e-23 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003427 [exp] 100 / 3e-23 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10015397 [exp] 100 / 3e-23 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025533 [exp] 101 / 4e-23 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021074 [exp] 100 / 4e-23 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040633 [exp] 100 / 7e-23 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 100 / 9e-23 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G209500.1 pacid=42796278 polypeptide=Potri.004G209502.1.p locus=Potri.004G209500 ID=Potri.004G209500.1.v4.1 annot-version=v4.1 ATGGCATCATCATCATCATCTCAATTTCGAGTCTTGAAGCTACATTCTCACTCACGCATCTCTCTGTCACAAATTCTGCGTCGTTTCAGCAGCTCCATTA AAGGATCAACTGCTGGTGCTGGTTTCAATTTCGATGATGAAAAAGAGAGGAGATTGCAGAACCAGAACCCTCCGGAACCCATACCGAATAGGCCCTTAAG AGGTGAGAGACCTAACCCTAACAGTAATCATAGCTCTAGCAATAGAGGAGGGGGAGGACCTAACCTTAACAGTGATCATAGCTCTAGTAATAGAGGAGGA AGAGGACCTAAACCTAACTTTAACAACAACACTAACAGACCCGCCCGCCCTCAACCATCTCACCATCCCTCCACAACCTCTCCTTTTAATCTTCAGCCCC AGACCCAAACTCATGATTTTAATCGTATCTCTGATGATGCTTTTCTTGATAAATTCAAGCTTCATCCTGACCATAACAACAACGTCAACAAGGATGCTGC CGCTGCTGATACTAAGGCTGCTGCTGCTCCTCCTCCTCCCAAAAATGAACAAGCAAGCAGCGCCTCCACTTCCGAGCCCTCACAGGATGCTGAACAAATC TTCAACAAGATGAAGGAAACTGGGCTCATCCCCAATGCTGTCGCCATGCTTGATGGCCTTTGCAAAGATGGCCTTGTCCAGGAAGCCTTGAAACTCTTCG GCACTATGCGCGAGAAAGGCACCATCCCTGAAGTTGTTATTTACACTGCTGTTGTTGATGGCTTTTGCAAAGCCCACAAGTTGGATGATGCCAAGAGGAT TTTCAGGAAAATGCAGTCCAATGGCATCACTCCTAATGCTTTCAGCTACGCTGTATTGATTCAGGGACTCTCTAAATGTAACCTCTTTGATGATGCTATC GACTTCTGTTTTGAAATGCTGGAGCTCGGTCACTCTCCCAATGTTACCACCTTTGTTGGATTGATTGATGGCTTGTGTAGGGAAAAGGGAGTCGAAGAAG CCAGGACTGTTATTGGAACATTGCGCCAAAAGGGATTCCATGTTCATGACAAAGCCGTTAGAGACTTTTTGGACAAGAACAAACCACTTTCTTCCTCTGT TTGGGATGCTATTTTTGGGAAGAAACCTTCACACAAACCTTTTTGA
AA sequence Show only first row Show all	>Potri.004G209500.1 pacid=42796278 polypeptide=Potri.004G209502.1.p locus=Potri.004G209500 ID=Potri.004G209500.1.v4.1 annot-version=v4.1 MASSSSSQFRVLKLHSHSRISLSQILRRFSSSIKGSTAGAGFNFDDEKERRLQNQNPPEPIPNRPLRGERPNPNSNHSSSNRGGGGPNLNSDHSSSNRGG RGPKPNFNNNTNRPARPQPSHHPSTTSPFNLQPQTQTHDFNRISDDAFLDKFKLHPDHNNNVNKDAAAADTKAAAAPPPPKNEQASSASTSEPSQDAEQI FNKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGTMREKGTIPEVVIYTAVVDGFCKAHKLDDAKRIFRKMQSNGITPNAFSYAVLIQGLSKCNLFDDAI DFCFEMLELGHSPNVTTFVGLIDGLCREKGVEEARTVIGTLRQKGFHVHDKAVRDFLDKNKPLSSSVWDAIFGKKPSHKPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38150			Pentatricopeptide repeat (PPR)...		Potri.004G209500 [exp]	0	1
AT5G64680			unknown protein		Potri.001G068500 [exp]	1.41	0.8584
AT1G04945			HIT-type Zinc finger family pr...		Potri.001G228000 [exp]	5.65	0.8688
AT5G63150			unknown protein		Potri.012G090700 [exp]	6.32	0.8396
AT1G03140			splicing factor Prp18 family p...		Potri.005G210600 [exp]	8.12	0.8353
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.014G135600 [exp]	10.00	0.8518
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.003G180700 [exp]	10.90	0.8329
AT2G17670			Tetratricopeptide repeat (TPR)...		Potri.005G103300 [exp]	12.84	0.8523
AT3G06610			DNA-binding enhancer protein-r...		Potri.008G105000 [exp]	19.28	0.7973
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.003G155600 [exp]	19.39	0.8290
AT5G57120			unknown protein		Potri.006G073100 [exp]	19.44	0.8198

Compare expression of checked genes

Potri.004G209500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.