Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58140 1333 / 0 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 1058 / 0 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT4G26610 360 / 1e-113 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 359 / 2e-113 D6PK D6 protein kinase (.1) AT5G47750 360 / 1e-112 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT2G44830 364 / 3e-112 Protein kinase superfamily protein (.1) AT5G40030 350 / 4e-110 Protein kinase superfamily protein (.1) AT1G79250 352 / 6e-110 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 350 / 3e-109 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G16440 345 / 4e-108 RSH3 root hair specific 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G170640 [exp] 1186 / 0 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G342000 [exp] 1115 / 0 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.009G170550 [exp] 459 / 8e-156 AT5G58140 400 / 1e-134 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.016G004900 [exp] 357 / 4e-111 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 355 / 2e-110 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 355 / 8e-110 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.014G047500 [exp] 355 / 5e-109 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 346 / 3e-108 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 352 / 5e-108 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026572 [exp] 1412 / 0 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001604 [exp] 1350 / 0 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001355 [exp] 1275 / 0 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10036144 [exp] 1009 / 0 AT3G45780 1061 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10018122 [exp] 990 / 0 AT3G45780 1191 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10013856 [exp] 429 / 1e-139 AT5G58140 368 / 8e-120 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10038753 [exp] 355 / 9e-111 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 355 / 1e-110 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 354 / 2e-110 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 351 / 3e-110 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0183 [poplar] [flax] PAS_Fold PF13426 [poplar] [flax] PAS_9 PAS domain
Representative CDS sequence Show only first row Show all	>Potri.004G209700.19 pacid=42794054 polypeptide=Potri.004G209700.19.p locus=Potri.004G209700 ID=Potri.004G209700.19.v4.1 annot-version=v4.1 ATGGACAAACCAAAGGTGAATTCTTCCACGGACGATCAAGCGCAGAGATCAATAGAGGTTTTTGATCCTCATAATGATAATAATGCTACTGGCACTAGAT CAACAGATGTCCAAGTAGTGGAGGAGGGATCCGGATCATCTCCAGCTACTAATGCTACTTCTGGTAGCGGCAGAGAGGCTTTGAACAAGTGGATGACATT TGAAAGAAAGTCCAAGAACACTTCTGATCGTGATGATTCCATAACAGATCAATCGAACGGGACTGGGACCAGCGCTACGGTTAAAGCTGGAAAAGATGAA GATCAAGGCACCTCATCCGATCATAACAACTCATCTTCTATAGGACAATCCTCCCCCTCCTCTTCAAATAAGATACTAACCGGAGCTAGCATTGCAGAAA GGACTGCAGAATGGGGAATATTTGTGAGGTCAGATGTAGGAGAACGTAGTTTCAAAGCTATAGCAACTAGATCAGAACAAGAGGAGAATGGAGGAAATAG AAGCAAAAAAAACTCATTTATGGTGGAGTCGACGAGGACATCAGAGGAAAGCGAAGCAGGAGGAACCGTTCCGAGGGTATCCCAAGAGCTGAAGAATGCT CTAGCAACATTGCAGCAAACGTTTGTGGTCTCTGATGCCACCAAACCAGACTACCCTATCATGTTTGCAAGCAGTGGTTTTTTTACTATGACCGGCTATT CTTCGAAAGAAGTTATCGGAAGGAACTGCCGGTTTCTGCAAGGCGCAGGCACGGACCAAAATGAAGTGGCGAAGATACGAGATGCCGTCAAGAATGGGAC AAGTTACTGCGGGAGGCTTCTCAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTCACCGTCACCCCTATCAAGGATGATCGTGGCAACACTATC AAATTCATTGGAATGCAGGTGGAGGTCAGCAAATATACGGAAGGTGTTAACGACAAGGCTTTGCGCCCAAATGGATTGCCCAAGTCTTTAATCCGCTACG ATGCTCGTCAGAAGGCTAAGGCTTTAGATTCCATGACTGAAGTTGTCCAAACTGTCAAGCACCCCAAATCTCACTCTCGCACTGTGAGCCATGAAACTTC TGGCAACCTCGATTATGTTCTCCCTAAATCCATCGATCTTGACAATGTCACCGCACCTGGCAGACTCACTCCAGTTAATGTCTCTCAATCCCCCACCACC TTTCCTGACGCTGCCAAAAACTCGAGAAAATCATCTCGCATTTCCTTGATGGGGTTCAAATCTAAGTCTACACATTCTGCAGAAAAGCATGAAGAACCAC CAACTATTGAACCTGAGGTTTTGATGACTAAAGACATTGAACGCTCTGACAGCTGGGACCGTGCTGAATGGGAAAGGGATACACGCCAAGGATTTGATTT AGCTACCACATTGGAACGCATTGAAAAGAATTTTGTGATCACAGATCCTAGGCTTCCTGATAACCCCATTATATTTGCTTCTGATAGCTTTCTTGAACTA ACAGAATACACTCGAGAAGAAATTTTGGGAAGAAACTGTCGGTTTCTTCAAGGACCTGAGACAGATCAAGCAACTGTCTCAAAGGTAAGAGATGCTATAA GAGAACAAAGAGAAATCACTGTTCAGTTGATCAACTATACCAAGAGTGGAAAGAAATTCTGGAACTTATTTCACTTGCAGCCTATGCGTGACCAAAAGGG TGAACTTCAATACTTCATTGGTGTTCAACTGGATGGAAGTGATCATGTGGAACCACTGCAAAACCGCCTGTCAGATGCAACAGAACTACAAAGTGCTAAG TTGGTTAAAGCTACTGCAGAAAATGTGGATGAAGCTGTTCGAGAACTTCCTGATGCCAACTTGAGACCTGAAGATTTGTGGGCAATTCATTCTCAACCTG TCTTTCCACGGCCTCACAAAAAGAATAGTCGTTCTTGGACTGCAATTCAGAAGATCACTTCCCGTGGAGAAAAGATTGGTCTACATCATTTCAAGCCCAT AAAACCCTTGGGCTGTGGTGATACTGGCAGTGTGCATTTAGTGGAACTGGAAGGTGCAGGGGAGCTGTATGCTATGAAGGCAATGGAAAAATCTATAATG CTGAACCGTAACAAGGTTCATCGAGCATGCATTGAGAGGGAAATCATTTCGCAATTGGATCATCCTTTTCTTCCAACACTGTATTCTTCTTTTCAGACTT CTACACACGTTTGTCTGATAACAGACTTTTTCCCTGGTGGAGAGTTATTTGGATTGCTTGACAAGCAACCCATGAAATTATTCAATGAGGAATCTGCAAG GTTCTATGCTGCGGAGGTTGTGATTGGCTTGGAATATCTTCATTGTTTAGGAATAGTTTATCGGGACCTGAAGCCTGAAAATATTCTACTTCAGAAGGAT GGACATATTGTCTTGAGTGACTTTGATTTGTCATTCTTGACATCCTGCAAACCACAAATTATAAAGCATGCACCACCTAATAAAAGAAGAAGATCAAGGA GTCAAGCACCACCAACATTTGTCGCAGAACCAATAACTCAATCAAATTCTTTTGTTGGAACTGAAGAATATATTGCTCCTGAAATAATCACAGGCATGGG CCACAGCAGTGCGATTGACTGGTGGGCTCTTGGTATTTTGTTGTATGAGATGCTATATGGTCGTACACCTTTCAGGGGAAAGAACAGGCAAAAGACATTT GCCAACATTTTGCACAAAGATCTCACCTTTCCAAGTAGCATCCCTGTTAGTCTTTCAGGCAGACAATTGATCAATGCGTTGTTGAACAGAGACCCTTCCA TCCGATTAGGATCAAAAGCTGGTGCTAATGAAATCAAACAACATCCATTTTTCCGTGGAATTAATTGGCCTCTCATACGCTGCATGAACCCACCACGCCT GGATGCGCCTCTGCAATTAATTGGAAAAGATCCGAAGGCCAAGGATGTTACGTGGGAAGATGATGGCGTGCTTGTACAGTCTATGGAATTGGATATTTTT TAA
AA sequence Show only first row Show all	>Potri.004G209700.19 pacid=42794054 polypeptide=Potri.004G209700.19.p locus=Potri.004G209700 ID=Potri.004G209700.19.v4.1 annot-version=v4.1 MDKPKVNSSTDDQAQRSIEVFDPHNDNNATGTRSTDVQVVEEGSGSSPATNATSGSGREALNKWMTFERKSKNTSDRDDSITDQSNGTGTSATVKAGKDE DQGTSSDHNNSSSIGQSSPSSSNKILTGASIAERTAEWGIFVRSDVGERSFKAIATRSEQEENGGNRSKKNSFMVESTRTSEESEAGGTVPRVSQELKNA LATLQQTFVVSDATKPDYPIMFASSGFFTMTGYSSKEVIGRNCRFLQGAGTDQNEVAKIRDAVKNGTSYCGRLLNYKKNGTPFWNLLTVTPIKDDRGNTI KFIGMQVEVSKYTEGVNDKALRPNGLPKSLIRYDARQKAKALDSMTEVVQTVKHPKSHSRTVSHETSGNLDYVLPKSIDLDNVTAPGRLTPVNVSQSPTT FPDAAKNSRKSSRISLMGFKSKSTHSAEKHEEPPTIEPEVLMTKDIERSDSWDRAEWERDTRQGFDLATTLERIEKNFVITDPRLPDNPIIFASDSFLEL TEYTREEILGRNCRFLQGPETDQATVSKVRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLQNRLSDATELQSAK LVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKNSRSWTAIQKITSRGEKIGLHHFKPIKPLGCGDTGSVHLVELEGAGELYAMKAMEKSIM LNRNKVHRACIEREIISQLDHPFLPTLYSSFQTSTHVCLITDFFPGGELFGLLDKQPMKLFNEESARFYAAEVVIGLEYLHCLGIVYRDLKPENILLQKD GHIVLSDFDLSFLTSCKPQIIKHAPPNKRRRSRSQAPPTFVAEPITQSNSFVGTEEYIAPEIITGMGHSSAIDWWALGILLYEMLYGRTPFRGKNRQKTF ANILHKDLTFPSSIPVSLSGRQLINALLNRDPSIRLGSKAGANEIKQHPFFRGINWPLIRCMNPPRLDAPLQLIGKDPKAKDVTWEDDGVLVQSMELDIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Potri.004G209700 [exp]	0	1
AT1G71810			Protein kinase superfamily pro...		Potri.002G061000 [exp]	3.16	0.9507
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Potri.010G115000 [exp]	3.87	0.9587
AT5G55220			trigger factor type chaperone ...		Potri.015G065900 [exp]	4.00	0.9621
AT3G26070			Plastid-lipid associated prote...		Potri.003G020700 [exp]	4.00	0.9574
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	6.92	0.9610
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.006G190000 [exp]	12.24	0.9408
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Potri.001G136600 [exp]	13.22	0.9426
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G106900 [exp]	13.41	0.9562	FBP.1
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Potri.006G133900 [exp]	20.97	0.9441
AT2G13440			glucose-inhibited division fam...		Potri.005G066300 [exp]	21.84	0.9326

Compare expression of checked genes

Potri.004G209700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.