Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPD3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38130 816 / 0 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G63110 589 / 0 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT3G44680 506 / 9e-178 HDA09, HDA9 histone deacetylase 9 (.1) AT5G35600 446 / 1e-154 HDA7 histone deacetylase7 (.1) AT3G44490 130 / 1e-35 HDA17 histone deacetylase 17 (.1) AT1G08460 119 / 2e-29 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT5G61060 115 / 3e-27 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT3G18520 108 / 8e-25 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT3G44660 100 / 9e-25 HDA10 histone deacetylase 10 (.1) AT5G61070 106 / 4e-24 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G170700 [exp] 919 / 0 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.015G082500 [exp] 602 / 0 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.012G083800 [exp] 590 / 0 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.001G460000 [exp] 507 / 4e-178 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.004G092900 [exp] 113 / 2e-26 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.012G060400 [exp] 102 / 6e-23 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.009G020500 [exp] 94 / 8e-21 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.005G064200 [exp] 84 / 3e-17 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.006G230300 [exp] 74 / 3e-14 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001605 [exp] 851 / 0 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10001356 [exp] 834 / 0 AT4G38130 809 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10019486 [exp] 598 / 0 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10020570 [exp] 520 / 0 AT3G44680 806 / 0.0 histone deacetylase 9 (.1) Lus10043337 [exp] 519 / 0 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10006274 [exp] 508 / 2e-177 AT3G44680 756 / 0.0 histone deacetylase 9 (.1) Lus10034689 [exp] 120 / 8e-29 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10024919 [exp] 105 / 6e-24 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10017845 [exp] 105 / 7e-24 AT5G61060 868 / 0.0 histone deacetylase 5 (.1.2) Lus10001850 [exp] 100 / 7e-23 AT1G08460 558 / 0.0 histone deacetylase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [poplar] [flax] Arginase PF00850 [poplar] [flax] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Potri.004G209800.4 pacid=42796747 polypeptide=Potri.004G209800.4.p locus=Potri.004G209800 ID=Potri.004G209800.4.v4.1 annot-version=v4.1 ATGGACACTGGTGGCAACTCTCTCTCGTCCGCTGCTCCTGACGGGGTTAAGAGAAAGGTTTGCTATTTCTACGATCCAGAAGTCGGCAATTACTATTATG GCCAAGGTCACCCCATGAAGCCCCACCGCATTCGAATGACCCATGCTCTGCTTGCCCACTATGGTTTGCTTCAGCACATGCAGGTCCTCAAGCCCTTTCC TGCTCGCGACCGGGATCTTTGCCGCTTCCATGCCGATGATTATGTCTCTTTCCTCCGCAGCATTACCCCTGAGACCCAGCAGGACCAGCTCAGGCAGCTC AAGCGCTTTAATGTCGGTGAAGATTGCCCTGTTTTTGATGGCCTCTACTCCTTCTGCCAGACTTATGCTGGTGGATCTGTTGGTGGTGCCGTCAAGTTAA ATCACAACCTCTGTGACATTGCTGTCAATTGGGCTGGTGGCCTCCATCATGCTAAGAAGTGTGAGGCTTCTGGTTTTTGTTATGTCAATGACATCGTGCT TGCAATCCTGGAGCTTCTTAAAGTGCATGAGCGTGTTCTGTATGTGGATATCGACATTCATCACGGTGACGGTGTGGAGGAAGCATTTTACACCACTGAT AGAGTCATGACTGTTTCATTCCATAAATTTGGAGATTATTTTCCCGGCACTGGGGATGTACGTGATATTGGATATTCAAAAGGAAAATACTACTCTCTTA ATGTTCCGTTGGATGATGGGATTGATGATGAGAGCTATCATTTCTTGTTTAAACCACTAATTGGAAAAGTAATGGAAGTTTTTAAGCCAGGCGCTGTGAT TCTCCAATGTGGTGCCGACTCATTATCCGGGGATAGATTAGGATGCTTCAATCTTTCAATCAAGGGCCATGCAGAGTGTGTTAAATTTATGAGATCTTTT AATGTGCCATTATTGCTATTGGGTGGTGGTGGCTACACCATTCGAAATGTCGCTCGCTGCTGGTGCTATGAGACTGGAGTTGCACTTGGAATAGAAGTTG ATGATAAGATGCCTCAGCATGAGTATTATGAGTACTTCGGTCCAGATTATACTCTTCATGTTGCCCCTAGCAACATGGAAAATAAGAATTCCCACCAGGT ACTTGAGGAAATACGGTGCAAGCTCCTTGATAATCTTTCAAAGCTTCAGCATGCACCCAGTGTCCAATTTCAGGAAAGAGTACCTGATACTGAGCTTCCG GAGGCAGAAGAAGAACAGAATGAAGCAGATGAGAGATGGGATCCAGATTCCGACATGGATGTTGATGAAGAACGCAAGCCATTACCAGGCAGAGTCAAGA GAGAAATAGTTGAAGCTGAGCCAAAAGAGTCGGAGGGCCAGAAAGGAAGTTCTGGGCATGCTAGAGGCTTTGATACAACAATAGCCGAGAATGCAAGTGG AAAGGCTCTGGATGCTGGTCCTAAGCAAATTGATGAGGCAGGTGTGAGAGTTGAGCAGGAGAATGTGAACAAGGCATCTTCTGATCAGATGTTCTCCAAG TCATGA
AA sequence Show only first row Show all	>Potri.004G209800.4 pacid=42796747 polypeptide=Potri.004G209800.4.p locus=Potri.004G209800 ID=Potri.004G209800.4.v4.1 annot-version=v4.1 MDTGGNSLSSAAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQLRQL KRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHNLCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKVHERVLYVDIDIHHGDGVEEAFYTTD RVMTVSFHKFGDYFPGTGDVRDIGYSKGKYYSLNVPLDDGIDDESYHFLFKPLIGKVMEVFKPGAVILQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF NVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSHQVLEEIRCKLLDNLSKLQHAPSVQFQERVPDTELP EAEEEQNEADERWDPDSDMDVDEERKPLPGRVKREIVEAEPKESEGQKGSSGHARGFDTTIAENASGKALDAGPKQIDEAGVRVEQENVNKASSDQMFSK S

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Potri.004G209800 [exp]	0	1	RPD3.2
AT5G39590			TLD-domain containing nucleola...		Potri.005G236400 [exp]	5.65	0.7226
AT1G67170			unknown protein		Potri.017G109700 [exp]	8.83	0.7622
AT1G51340			MATE efflux family protein (.1...		Potri.009G053700 [exp]	15.58	0.7392
AT5G48220			Aldolase-type TIM barrel famil...		Potri.014G169100 [exp]	20.00	0.7441
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Potri.014G130700 [exp]	31.30	0.6968	GRP2.2
AT4G26620			Sucrase/ferredoxin-like family...		Potri.001G369300 [exp]	36.93	0.7026
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Potri.006G039400 [exp]	38.36	0.7132
AT5G22790		RER1	reticulata-related 1 (.1)		Potri.009G150400 [exp]	48.14	0.7066
AT3G59910			Ankyrin repeat family protein ...		Potri.007G146500 [exp]	50.09	0.7207
AT2G30942			Protein of unknown function (D...		Potri.002G263100 [exp]	51.16	0.7140

Compare expression of checked genes

Potri.004G209800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.