Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35440 731 / 0 CLCE, ATCLC-E, CLC-E chloride channel E (.1.2) AT1G55620 351 / 1e-109 CLCF, ATCLC-F, CLC-F chloride channel F (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G472700 [exp] 337 / 3e-104 AT1G55620 860 / 0.0 chloride channel F (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026573 [exp] 486 / 8e-167 AT4G35440 455 / 4e-155 chloride channel E (.1.2) Lus10013857 [exp] 329 / 4e-107 AT4G35440 300 / 1e-96 chloride channel E (.1.2) Lus10032888 [exp] 344 / 1e-106 AT1G55620 1052 / 0.0 chloride channel F (.1.2) Lus10027138 [exp] 343 / 3e-106 AT1G55620 1050 / 0.0 chloride channel F (.1.2) Lus10013858 [exp] 177 / 5e-50 AT4G35440 171 / 2e-48 chloride channel E (.1.2) Lus10026574 [exp] 170 / 1e-47 AT4G35440 162 / 3e-45 chloride channel E (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain PF00654 [poplar] [flax] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Potri.004G209900.2 pacid=42794829 polypeptide=Potri.004G209902.1.p locus=Potri.004G209900 ID=Potri.004G209900.2.v4.1 annot-version=v4.1 ATGGGAAGTGCATTGCCTCCACGACTGCTCATCTCTGCTTCCCTCTCCCTCTCCCTCTCCAGAAGAAACCGATTGTTCTCCTCCTCTTCAAATTATCGCT ATTACCAGTACAAAAAGATTGGGATCCCCACTGCCCTCCCAGCCCCGTTAACCCCAGCTGAGAGAAGAAGAGATTACACTAGTACTGTTAATGCTACTGT TACTGCAACTGCAAGCAATGAAGACGATGAAAATCAAAAGCCAAAACTGATCAGAAAGATAAATGATGGTGGTGGTGGTGGTGGTGGTGGTAATTCCGGT ATAATAATAACATCTTGCTTGGTGGGTCTTTTGACTGGGATAGCTGTAGTGCTGTTCAACAACGCAGTGCATGAAATACGGGACTTTTTCTGGGATGGAA TTCCTTATAGGGGTGCTACCTGGTTGAGAGAGGAGCCTCTCGACTCTAACTGGTTAAGAGTTGTCTCCGTCCCTGCTTGTGGCGGCTTGATCGTTAGCAT CTTGAACCACCTTCAAACAACCATTATTACCAGTAGTAGTAGTACTACTAATAAAAACGATAAAAAAGGATGGCTACAACTACCAGTGGCTGCTGTCGCC GCCGCTCCTAGTTTCTTGAAAACGTTGGCTGCTTGTTTCACTCTTGGTACTGGTAATTCCCTTGGCCCCGAAGGTCCTAGTGTCGAGATTGGTGCTTCCG TAGCCAAAGGAATTGCTTCTCTCGCTGTCTTTAATAATCACAATTCTAATCAAACAAAACTTTCCCTCCTAGCTGCTGGCTCTGCTGCTGGAATCTCGTC TGGATTCAATGCGGCTGTTGCTGGTTGTTTTTTTGCTGTGGAGTCGGTGTTGTGGCCATCTCCAAGTGATTCAAAAACATCACTCACAAACACCACTTCT ATGGTTATACTTAGCGCTGTCGTAGCTTCTGTTGTATCAGAAATTGGTCTTGGTTCTGAACCAGCTTTTAAGGTCCCCGACTATGACTTCCGCTCCCCGA GTGAACTTCCACTGTATCTTTTGCTGGGTATCCTCTGCGGCTTGGTTTCATTGACCTTATCTAGATGCACATCCTTCATGCTCTCAACTGTCAATCATCT TCACCGCACTGTTGGTATTCCAAGTGCTGCGTTTCCTGTACTAGGTAGTTTGGCTACTGGCACCATAGCTTTGGCATATCCTGAAATCCTATACTGGGGT TTTGAGAATGTTGACATTTTGTTGGAATCTCGGCCATTTGTCCAGGGCCTCTCAGCTGACCTATTGCTTCAGCTTGTAGGAGTCAAGATAGTTGCAACCT CCTTATGCCGGGCCTCTGGATTAGTAGGAGGCTACTATGCCCCATCCCTCTTTATCGGTGCTGCAACTGGAATGGCATATGGGAAGTTCATTAATATTGC AGTTGCTCAATCTAGTCCCACACTTCAACTATCCTTCTTGGAAGTGGCATCACCACAAGCTTATGGGCTGGTTGGAATGGCTGCGACACTTGCAGGGGTG TGTCAGGTACCTCTTACTGCAGTTTTGCTGCTCTTTGAATTGACACAAGACTATCGAATAGTTCTACCACTACTCGGAGCTGTAGGGTTGTCCTCATGGG TCACATCTGGACAGAAAAGAAGAAGGGATGGCAAAGGTACCACAAAACTCAATGAGGGAAACAGGCGCCCAACTCAAGAACCTGAAATGTCTTCCTCCGA GACAAGTGGACTGTCCTCTGATTATGTACTTACCGAAAAGGCACCTTATGAAAATAACCCTTGTGAAATTGAAAGTTCTCTCTGCATAGATGATTCTAGT ATTGAAACTGAAGTTTTCGAGAAGAACGTTTTAGTTTCAGAAGCCATGAGAACAAGATATGTAACTGTTCTCATGAGCACTTTACTCACTGAAGCAGTGA GTCTTATGCTTGCAGAAAAGCAGTCTTGTGCAATGGTTGTTGATGACAATAATATTTTAATTGGTTTGCTGACTCTTGCCGACATTGATGATTTTAGCAA AATTATAAAGTCTGAAAACAGGATAACCAAGGAGCTTTTAGTAACTGAATTGTGTTCCTTAGATGGAAAAAGATGTCAAGTACCCTGGATCGCAAAGCCT AGTATGGATCTTCTCTCAGTGCAGATCATCATGGATAGGCATGGTGTGAATCAGGTTCCCGTTGTTTCAGAACATATTGAAGATCACAAGAGGCAACCAG TAGGTCTTTTGGACAGAGAATGTATCAGCGTGACTTTCAGAGCCCTAGCGACCAGAGAATCCCTCAGATAG
AA sequence Show only first row Show all	>Potri.004G209900.2 pacid=42794829 polypeptide=Potri.004G209902.1.p locus=Potri.004G209900 ID=Potri.004G209900.2.v4.1 annot-version=v4.1 MGSALPPRLLISASLSLSLSRRNRLFSSSSNYRYYQYKKIGIPTALPAPLTPAERRRDYTSTVNATVTATASNEDDENQKPKLIRKINDGGGGGGGGNSG IIITSCLVGLLTGIAVVLFNNAVHEIRDFFWDGIPYRGATWLREEPLDSNWLRVVSVPACGGLIVSILNHLQTTIITSSSSTTNKNDKKGWLQLPVAAVA AAPSFLKTLAACFTLGTGNSLGPEGPSVEIGASVAKGIASLAVFNNHNSNQTKLSLLAAGSAAGISSGFNAAVAGCFFAVESVLWPSPSDSKTSLTNTTS MVILSAVVASVVSEIGLGSEPAFKVPDYDFRSPSELPLYLLLGILCGLVSLTLSRCTSFMLSTVNHLHRTVGIPSAAFPVLGSLATGTIALAYPEILYWG FENVDILLESRPFVQGLSADLLLQLVGVKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINIAVAQSSPTLQLSFLEVASPQAYGLVGMAATLAGV CQVPLTAVLLLFELTQDYRIVLPLLGAVGLSSWVTSGQKRRRDGKGTTKLNEGNRRPTQEPEMSSSETSGLSSDYVLTEKAPYENNPCEIESSLCIDDSS IETEVFEKNVLVSEAMRTRYVTVLMSTLLTEAVSLMLAEKQSCAMVVDDNNILIGLLTLADIDDFSKIIKSENRITKELLVTELCSLDGKRCQVPWIAKP SMDLLSVQIIMDRHGVNQVPVVSEHIEDHKRQPVGLLDRECISVTFRALATRESLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Potri.004G209900 [exp]	0	1
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Potri.009G100900 [exp]	2.00	0.9323
AT1G04880	ARID		HMG (high mobility group) box ...		Potri.017G055200 [exp]	4.24	0.9238
AT1G25440	CO	COL16	B-box type zinc finger protein...		Potri.010G125100 [exp]	5.00	0.9153	COL6.3
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.007G017800 [exp]	5.74	0.8997
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.001G090800 [exp]	7.21	0.9157
AT1G03670			ankyrin repeat family protein ...		Potri.018G078450 [exp]	7.74	0.9122
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Potri.002G157200 [exp]	9.32	0.8747
AT2G20740			Tetraspanin family protein (.1...		Potri.011G050900 [exp]	9.38	0.9097
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Potri.001G351800 [exp]	9.53	0.8959
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.014G170600 [exp]	9.79	0.8961	Pt-COL11.2

Compare expression of checked genes

Potri.004G209900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.