Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17390 430 / 3e-151 AKR2B ankyrin repeat-containing 2B (.1) AT4G35450 424 / 4e-149 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G03430 70 / 1e-13 Ankyrin repeat family protein (.1) AT5G53470 68 / 1e-12 ACBP1 acyl-CoA binding protein 1 (.1) AT4G27780 68 / 2e-12 ACBP2 acyl-CoA binding protein 2 (.1) AT3G23280 67 / 5e-12 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT2G47450 66 / 8e-12 CPSRP43, CAO CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) AT5G12320 62 / 2e-11 ankyrin repeat family protein (.1) AT3G58760 60 / 8e-10 Integrin-linked protein kinase family (.1) AT2G31800 59 / 2e-09 Integrin-linked protein kinase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G210000 [exp] 601 / 0 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.010G161300 [exp] 76 / 9e-16 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 71 / 4e-13 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.001G276100 [exp] 67 / 4e-13 AT5G12320 191 / 1e-63 ankyrin repeat family protein (.1) Potri.009G070700 [exp] 65 / 2e-12 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.008G167600 [exp] 68 / 3e-12 AT3G23280 501 / 1e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.006G121500 [exp] 65 / 3e-12 AT3G09890 196 / 1e-63 Ankyrin repeat family protein (.1.2) Potri.009G140500 [exp] 67 / 5e-12 AT2G47450 423 / 7e-148 CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) Potri.010G070750 [exp] 65 / 2e-11 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013859 [exp] 515 / 0 AT2G17390 427 / 1e-150 ankyrin repeat-containing 2B (.1) Lus10026575 [exp] 489 / 1e-174 AT2G17390 427 / 2e-150 ankyrin repeat-containing 2B (.1) Lus10001605 [exp] 503 / 1e-173 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10009696 [exp] 69 / 1e-13 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1) Lus10036033 [exp] 68 / 1e-13 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) Lus10002621 [exp] 71 / 3e-13 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10020272 [exp] 70 / 6e-13 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10033896 [exp] 69 / 2e-12 AT3G23280 294 / 7e-96 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009674 [exp] 64 / 5e-11 AT3G23280 499 / 6e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10023973 [exp] 64 / 7e-11 AT2G47450 391 / 2e-135 CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.004G210100.1 pacid=42793924 polypeptide=Potri.004G210100.1.p locus=Potri.004G210100 ID=Potri.004G210100.1.v4.1 annot-version=v4.1 ATGGCGACCACGAACAAGGATGTTACCATTCCATCTGAGGAGAAAACAGGTTCGGCTTCGGCAGCAGAAAATAACAGCAAAGACTCCTCTTCTAAATCAT CAGTAACCTCCTCAACCTCCGGGGAACAAGGAAGAGCTCCTCCTCCTCAATCTTCTGGACTGGGAGGTGCCTCTGCTGCTGCTGGATTTCCTCCTAATCC TTTTGATTTTTCTGCTATGACCGGCCTGCTTAATGACCCGAGCATCAAAGAGTTAGCCGAGCAGATATCCAAAGATCCTTCATTCAATCAGATGGCAGAG CAGCTCCAGAAGACTTTTCAAGGTGCACCAGCCGAAGATGCTATCCCTAACTTTGATACTCAACAATACTATTCAACCATGCAACAGGTTATGCAGAATC CTCAATTTATGACTATGGCTGAGCGCCTTGGCAATGCATTAATGCAGGATCCATCAATGTCTCAAATGCTTGAGAGTTTCTCAAACCCATCGCAAAAGGA TCAGATTGAGGAGCGAATGACACGAATAAGAGAAGATCCTTCTTTAAAGCCTATTTTAGAAGAGATAGAGTCCGGTGGTCCAGCTGCCATGATGAGGTAC TGGAATGATAAAGACGTTCTCCAGAAGTTGGGTGAAGCAATGGGTCTTGCAGTTTCCGAAGAAGCAGGCACTTCTGTGGAAACTTCTGGACACGAGGAAG CAGAAGAAGCAGGAAATGAGGATGAATCAGTTGTCCATCACTGTGCCAGTGTTGGTGATGTTGAGGGTTTGAAAAATGCTCTAGCCTCTGGTGCTGACAA GGATGAAGAAGATTCAGAGGGAAGAACTGCATTGCATTTTTCCTGCGGATATGGGGAGGTGAAGTGTGCCCAAATTCTTCTCGAGGCTGGGGCAACTGTT GATGCACTGGATAAGAACAAGAACACCGCCCTGCATTATGCAGCTGGTTATGGAAGGAAGGAGTGTGTAGCCCTTTTACTGGAAAATGGCGCTGCAGTTA CACTTCAGAACATGGATGGCAAGACGCCCATTGATGTTGCTAAACTCAACAACCAGCAAGAGGTGCTAAAGTTGCTCGAGAAGGATGCCTTCCTGTAA
AA sequence Show only first row Show all	>Potri.004G210100.1 pacid=42793924 polypeptide=Potri.004G210100.1.p locus=Potri.004G210100 ID=Potri.004G210100.1.v4.1 annot-version=v4.1 MATTNKDVTIPSEEKTGSASAAENNSKDSSSKSSVTSSTSGEQGRAPPPQSSGLGGASAAAGFPPNPFDFSAMTGLLNDPSIKELAEQISKDPSFNQMAE QLQKTFQGAPAEDAIPNFDTQQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSQMLESFSNPSQKDQIEERMTRIREDPSLKPILEEIESGGPAAMMRY WNDKDVLQKLGEAMGLAVSEEAGTSVETSGHEEAEEAGNEDESVVHHCASVGDVEGLKNALASGADKDEEDSEGRTALHFSCGYGEVKCAQILLEAGATV DALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQQEVLKLLEKDAFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Potri.004G210100 [exp]	0	1
AT1G30130			unknown protein		Potri.011G084000 [exp]	2.82	0.8289
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Potri.001G354000 [exp]	6.63	0.7757
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Potri.004G210000 [exp]	7.81	0.8853	Pt-AKR2.1
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Potri.014G130700 [exp]	34.59	0.7279	GRP2.2
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.013G016800 [exp]	51.02	0.7303	RPT5.2
AT5G48220			Aldolase-type TIM barrel famil...		Potri.014G169100 [exp]	61.06	0.7585
AT1G19140			unknown protein		Potri.006G139800 [exp]	61.98	0.7717
AT5G42960			unknown protein		Potri.014G181000 [exp]	69.26	0.7313
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.005G063900 [exp]	86.75	0.7339	Pt-SAL2.1
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Potri.008G147200 [exp]	112.06	0.7217

Compare expression of checked genes

Potri.004G210100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.