Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60410 1147 / 0 ATSIZ1, SIZ1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) AT5G41580 65 / 2e-10 RING/U-box superfamily protein (.1) AT1G08910 47 / 8e-05 EMB3001 zinc ion binding;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G015000 [exp] 1486 / 0 AT5G60410 1148 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.008G042300 [exp] 834 / 0 AT5G60410 775 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.010G219600 [exp] 820 / 0 AT5G60410 732 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Potri.003G133000 [exp] 63 / 6e-10 AT5G41580 466 / 1e-151 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038464 [exp] 1088 / 0 AT5G60410 1006 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10036123 [exp] 1056 / 0 AT5G60410 913 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10023344 [exp] 1032 / 0 AT5G60410 928 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5) Lus10011634 [exp] 992 / 0 AT5G60410 847 / 0.0 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0306 [poplar] [flax] HeH PF02037 [poplar] [flax] SAP SAP domain CL0229 [poplar] [flax] RING PF02891 [poplar] [flax] zf-MIZ MIZ/SP-RING zinc finger
Representative CDS sequence Show only first row Show all	>Potri.004G210200.5 pacid=42794506 polypeptide=Potri.004G210200.5.p locus=Potri.004G210200 ID=Potri.004G210200.5.v4.1 annot-version=v4.1 ATGGATTTAGTTGCTAGTTGCAAGGATAAATTGGCATTTTTTCGAATTAAAGAGCTCAAGGATGTCCTGACTCAGTTAGGTCTTTCAAAGCAGGGGAAGA AGCAGGACCTTGTTGACCGGATATTAGCCATTCTCTCTGACGAACAAGTTTCCAAGTTATGGGCAAAGAAGAGTGCCATTGGAAAGGAAGAGGTGGCAAA GCTAGTGGATGACACTTACAGGAAAATGCAAGTGTCCGGGGCCACTGATTTAGCATCACGGGGACAGGTTGCTTCTGATTGCAGTAATTCAAAGTTTAAT GGTGAAATGGATGATCCATCTCACTCAGATACAAAAGTTCGCTGTCCATGTGGAAGCTCATTGGAGACAGAGTCAATGATTAAGTGTGAAGATTTTAAAT GTCACGTTTGGCAACACATTGGTTGCGTTATAATTCCAGAAAAACCCATGGAGGGCATCCCACAAGTTCCTGATGTGTTCTATTGTGAGATTTGTCGACT AAGCAGGGCTGACCCCTTTTGGGTTACAGTTGCACATCCTCTAAGTCCTGTGAAGCTGGTTGCTACAAATGTTCCAGCTGATGGTTCAAGGCCAGTGCAG GGTGTGGAGAAGACATTTCAGCTCACTAGGGCAGACAAGGATCTGTTGGCAAAACAAGAATATGATGTTCAGGCCTGGTGTATGCTTTTGAATGACAAAG TTCCCTTTAGGATGCAATGGCCGCAGGATACAGATCTCCAGGTTAATGGCTTGGCTGTTCGTGCTATTAATAGACCTGGCTCGCAATTGCTAGGTGCTAA TGGTCGTGATGATGGTCCAATTGTCACACCATTTGTAAAAGATGGAATCAATAAGATTTTGTTAAGCGGATGTGATGCTCGAATCTTCTGCTTAGGAGTT AGAATTGTAAAACGTCGAACAGTTCAACAGATACTCAACTTGATCCCTAAGGACTCAGAAGGTGAGCGTTTTGAAGATGCACTTGCTCGTGTTTGTCGTT GTGTTGGTGGGGGAACTGCAACAGACAATGCTGATAGCGACAGTGACCTGGAAGTTGTTGCAGATTCTTTTGGTGTCAATCTTCGTTGTCCTATGAGTGG TTCAAGAATGAAGGTCGCAGGAAGATTCAAACCTTGTGCACACTTGGGCTGTTTTGACCTGGAAGTTTTTGTGGAGCTGAACCAGCGTTCTCGGAAGTGG CAGTGCCCCATCTGTCTCAAGAACTACTCCCTGGAGAATATAATCATTGACCCATATTTCAATCGCATCACATCTAAGATGACACATTGCTCAGAAGATA TAACAGAGATTGAGGTGAAGCCTGATGGTTCCTGGCGTGTGAAAACAAAAACTGAAGCTGAGCGTAGGGATGTTGGAGGACTTGCACAATGGCACAATCC TGATAGTACTCCCTGTTTCCCTGATGGTGGAGAAATCAAACCAAAAGTGGAAATAGTGAAGCAGATCAGACAGGAAGGTATTTCAGAAGGTAATGCTGGT ACTGGTTTGAAACTTGGAATCAGAAAGAACCGCAATGGCATTTGGGAAGTTAGCAAACCTGAAGATATGAACACCTTTTCTTCAGGTAGATTGCAAGAAA ACTTTGAACACCATGAACAGAAAGTTATTCCTATGAGCAGCAGTGCCACTGGTAGTGGTCGTGACGGGGAAGATCAAAGTGTGAATCAAGATGCTGGTGG AAATTATGATTTCACAAACAATGGAATGGAGCTTGATTCTTTATCTTTGAATGTATATACGACATATGGATTCACTGACCAAAATTTACCTGTACCACTA GGGAATGCAGAAGTCATTGTTCTTAGTGATTCAGATGACGATAATGATATACTAATTTCCCCTGGATCTGTCTACAAGAGTAATCAAAATGATGGCGATG CTACTTTTTCTGTGCCCTCTCCTGGAATTGCAGATCCTTTTCCAGAAGATCCTACACTTGTGACTGGTGCAAACTCGTGCTTGGGTCTTTTCAATGCTAA TGACGAATATGGGATGCCCCTCTGGTCACTGCCTTCAGGAAACCAAGCAGGCCCAGGATTCCAATTATTTAATTCAGATGTCTCTGATGCCTTGGTTGAT TTGCCACATGGTTCTGTTAACTGCCCCTTGTCAATGAATGGCTACACATTAGCTCCGGAAACTGTCATGGGATCTACATGTTTAATCCCGGACTCTTCTC TTGGTCGATCAGAGATGGATGTGAATGATGGCTTGCTTGATAATCCCTTGGCTTTTGGTGGAGAAGATCCCAGTCTTCAAATCTTCCTTCCAACCGGGCC TTCAGATGCATCAATGCACTCTGATATGAGGGATCAAGTTGATGTGTCAAATGGTGTCCGTTCTGAAGATTGGATCTCTCTTAGGCTTGGTGGTAGTGCT ACTAGCAATCATGGCGATTTGGTTCCTCCGACTAATGGACTGAATTCAAGACAGCAGATGCCATCTTCTCTGGATTCTTTGCCTGGCACTGCTTCTTCGC TTGGTATAAATGATGGCAGATCAGAAAAGGCAAGTCGACAAAGATCAGAAAGCACCTTCTCATTTCCTCGCCAAAAACGTTCTGTAAGACCACGACCGTA TCTTTCTATTGACTCGGACTCTGAATGA
AA sequence Show only first row Show all	>Potri.004G210200.5 pacid=42794506 polypeptide=Potri.004G210200.5.p locus=Potri.004G210200 ID=Potri.004G210200.5.v4.1 annot-version=v4.1 MDLVASCKDKLAFFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDEQVSKLWAKKSAIGKEEVAKLVDDTYRKMQVSGATDLASRGQVASDCSNSKFN GEMDDPSHSDTKVRCPCGSSLETESMIKCEDFKCHVWQHIGCVIIPEKPMEGIPQVPDVFYCEICRLSRADPFWVTVAHPLSPVKLVATNVPADGSRPVQ GVEKTFQLTRADKDLLAKQEYDVQAWCMLLNDKVPFRMQWPQDTDLQVNGLAVRAINRPGSQLLGANGRDDGPIVTPFVKDGINKILLSGCDARIFCLGV RIVKRRTVQQILNLIPKDSEGERFEDALARVCRCVGGGTATDNADSDSDLEVVADSFGVNLRCPMSGSRMKVAGRFKPCAHLGCFDLEVFVELNQRSRKW QCPICLKNYSLENIIIDPYFNRITSKMTHCSEDITEIEVKPDGSWRVKTKTEAERRDVGGLAQWHNPDSTPCFPDGGEIKPKVEIVKQIRQEGISEGNAG TGLKLGIRKNRNGIWEVSKPEDMNTFSSGRLQENFEHHEQKVIPMSSSATGSGRDGEDQSVNQDAGGNYDFTNNGMELDSLSLNVYTTYGFTDQNLPVPL GNAEVIVLSDSDDDNDILISPGSVYKSNQNDGDATFSVPSPGIADPFPEDPTLVTGANSCLGLFNANDEYGMPLWSLPSGNQAGPGFQLFNSDVSDALVD LPHGSVNCPLSMNGYTLAPETVMGSTCLIPDSSLGRSEMDVNDGLLDNPLAFGGEDPSLQIFLPTGPSDASMHSDMRDQVDVSNGVRSEDWISLRLGGSA TSNHGDLVPPTNGLNSRQQMPSSLDSLPGTASSLGINDGRSEKASRQRSESTFSFPRQKRSVRPRPYLSIDSDSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.004G210200 [exp]	0	1
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.005G046500 [exp]	2.00	0.7861
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.009G026200 [exp]	4.00	0.7687
AT2G37150			RING/U-box superfamily protein...		Potri.010G220700 [exp]	4.24	0.7236
AT5G24740			Protein of unknown function (D...		Potri.001G455600 [exp]	6.24	0.7919
AT1G63500			Protein kinase protein with te...		Potri.001G104700 [exp]	6.70	0.7860
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.010G174900 [exp]	7.07	0.7682
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.003G100600 [exp]	7.07	0.7113
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261300 [exp]	8.36	0.7660
AT5G13590			unknown protein		Potri.008G047600 [exp]	9.48	0.7341
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Potri.018G057200 [exp]	13.74	0.7648

Compare expression of checked genes

Potri.004G210200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.