Plant FIBer expression Database

Potri.004G210300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G45230 51 / 2e-08 hydroxyproline-rich glycoprotein family protein (.1)
AT5G60630 44 / 6e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G013500
[exp]
67 / 3e-14 AT3G45230 52 / 2e-08 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021479
[exp]
52 / 9e-09 AT3G45230 64 / 5e-13 hydroxyproline-rich glycoprotein family protein (.1)
Lus10022582
[exp]
50 / 4e-08 AT3G45230 67 / 2e-14 hydroxyproline-rich glycoprotein family protein (.1)
Lus10037404
[exp]
45 / 6e-06 AT3G45230 62 / 2e-12 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence
>Potri.004G210300.1 pacid=42795361 polypeptide=Potri.004G210300.1.p locus=Potri.004G210300 ID=Potri.004G210300.1.v4.1 annot-version=v4.1
ATGGCTACCACCACCACCATTAGAAGAACACCAATTGTTTACGCTCTTTTAGCCTTCTTCTTGTTATTACGATTCTCCTCCTCCACGGATACACCTCCTG
AACAATCACCATCTCCATCTCCTCAACAATCCGATTCACCATTACTATCTCCTCCTCCTCTTCTTCCACCCCCCTCTCTCTCACCAGAAACCGGATCTCC
CTCACCGACGACAATGGCATCCCCACCAGCATCACCTCCTTCAGATCTGACGGCTCATGTGCCCGCACCGGCTGAGAATGTTCCAGATCCGGATCCGTCG
GTGGCGAGCGATATAAATGTGAAAGCAGGAAATGGGAGTGAAGACGATGAAGAACAAGGGTCTGAGGGAATGAGTGGGGGGAAGAAGGCGGGGATAGCAG
CAGCAGTTATAGGGGCAGCTTGTTTGGTTGGCTTTGGAGGATTGGTTTATAAGAAGAGACAGGATAATATTCGAAGGTCTGCTTATGGTTATGCTGCTAG
AAGAGAGCTTCTTTGA
AA sequence
>Potri.004G210300.1 pacid=42795361 polypeptide=Potri.004G210300.1.p locus=Potri.004G210300 ID=Potri.004G210300.1.v4.1 annot-version=v4.1
MATTTTIRRTPIVYALLAFFLLLRFSSSTDTPPEQSPSPSPQQSDSPLLSPPPLLPPPSLSPETGSPSPTTMASPPASPPSDLTAHVPAPAENVPDPDPS
VASDINVKAGNGSEDDEEQGSEGMSGGKKAGIAAAVIGAACLVGFGGLVYKKRQDNIRRSAYGYAARRELL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G45230 hydroxyproline-rich glycoprote... Potri.004G210300
[exp]
0 1
AT5G18280 ATAPY2 apyrase 2 (.1.2) Potri.013G053500
[exp]
6.48 0.9377
AT1G01050 ATPPA1 pyrophosphorylase 1 (.1) Potri.002G181300
[exp]
7.48 0.9324
AT2G35190 NSPN11, ATNPSN1... novel plant snare 11 (.1) Potri.003G085200
[exp]
8.36 0.9362 Pt-NPSN11.1
AT5G11980 conserved oligomeric Golgi com... Potri.006G225500
[exp]
9.94 0.9325
AT3G25140 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRA... Potri.002G246500
[exp]
11.87 0.9059
AT5G03040 IQD2 IQ-domain 2 (.1.2.3) Potri.010G218100
[exp]
12.44 0.9322
AT4G31480 Coatomer, beta subunit (.1.2) Potri.018G007400
[exp]
14.89 0.9318
AT4G02500 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARAB... Potri.008G208000
[exp]
15.42 0.9094
AT5G18520 Lung seven transmembrane recep... Potri.016G081300
[exp]
18.16 0.9229
AT5G05010 clathrin adaptor complexes med... Potri.015G125400
[exp]
20.49 0.9294

Potri.004G210300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.