Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60600 1266 / 0 HDS, ISPG, CSB3, CLB4, GcpE CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G013400 [exp] 1360 / 0 AT5G60600 1272 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041304 [exp] 1278 / 0 AT5G60600 1307 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Lus10037407 [exp] 1277 / 0 AT5G60600 1316 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Lus10022583 [exp] 1251 / 0 AT5G60600 1271 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Lus10021480 [exp] 1131 / 0 AT5G60600 1162 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04551 [poplar] [flax] GcpE GcpE protein
Representative CDS sequence Show only first row Show all	>Potri.004G210400.4 pacid=42796238 polypeptide=Potri.004G210400.4.p locus=Potri.004G210400 ID=Potri.004G210400.4.v4.1 annot-version=v4.1 ATGGCGACTGGGGCTGTACCAGCATCATTTTCAGGGTTAAAGATGAGGGAATCAAGCTTAGGGTTTGGAAAAAGCGTGGATTTCGTGAGAATTTGTGATA TAAAGAGGATCAAATCCGGTAGAAAAAGAATTTCAATGATTCAAAACTCTAATACTGGTCCTGGGATTGTTGAGCTTCAACCTGCATCAGAAGGGAGCCC TCTATTAGTCCCAAGAAAAAAGTATTGTGAATCTATAAACAAGACTGTCAGAAGGAAAACACGCACTGTACTGGTGGGAAATGTGCCTCTTGGTAGTGAG CATCCTGTAAGGGTTCAAACTATGACCACAACTGACACCAAGGATGTTGCTGCGACAGTTGAACAGGTGATGAGAATAGCAGACAAGGGAGCAGATATAG TTCGTATAACAGTTCAAGGGAAGAGAGAAGCCGATGCCTGTTTTGAAATCAAAAACTCTCTTGTGCAGAAAAATTACAATATTCCTCTGGTTGCGGATAT TCATTTCGCTCCATCTGTTGCATTGCGAGTAGCTGAATGCTTTGACAAGATTCGTGTCAACCCAGGAAATTTTGCTGATAGGCGGGCTCAATTTGAGAAG CTAGAGTACACAGAAGATGACTATGAGAAAGAACTTGAGCATATTGAGAACGTTTTTACTCCATTGGTTGAGAAATGTAAGAAGTATGGAAGGGCAATGC GTATTGGAACAAACCATGGGAGTCTTTCAGATCGTATAATGAGCTACTATGGAGATTCTCCTAGGGGAATGGTTGAATCTGCATTTGAGTTTGCTAGGAT ATGTCGGAAGTTGGACTTCCATAATTTTGTCTTTTCAATGAAAGCAAGCAACCCAGTTGTCATGGTCCAGGCATACCGTCTACTTGTAGCGGAAATGTAT GTTCAAGGTTGGGATTATCCATTACACTTGGGCGTCACTGAAGCTGGAGAAGGTGAAGATGGGCGGATGAAATCTGCAATTGGCATTGGGACTCTTCTTC AGGATGGTTTGGGTGATACAATTAGGGTTTCACTTACAGAACCACCAGAAGAGGAGATAGATCCCTGCAGAAGGTTGGCCAATCTTGGTATGAGAGCAGC CGAAATTCAGCAAGGAGTGGCACCATTTGAGGAAAAGCACAGGCATTACTTTGATTTCCAGCGCCGATCTGGTCAATTGCCAGTGCAAAAGGAGGGTGAG GAGGTGGATTATAGAGGTGTCCTGCACCGTGATGGCTCCGTGCTCATGTCAGTCTCTTTAGATCAGTTGAAGGCACCCGAACTTCTCTATAAGTCACTTG CAGCAAAGATTGTTGTTGGGATGCCTTTTAAGGATCTGGCAACAGTTGACTCAATATTTTTGAGAGAGCTCCCACCAGTGGATGATAACGATGCTCGGCT AGCTCTCAAAAGGTTGATAGAAGTTAGTATGGGAGTAATAGCTCCTTTATCAGAGCAGCTAACGAAGCCATTACCCAATGCCATGGTTCTAGTCAACCTT AAGGAGTTGTCTACTGGTGCATACAAGCTTTTGCCAGAAGGTACACGCTTGGTTGTGTCTTTACGTGGCGATGAGCCCTGTGAAGAATTGGAAATTCTCG AACATGTTGATGCCACAATGATTCTTCATGTTCTACCCCTTTCAGAGGATAAGAGTGGCAGAGTGCATGCAGCAAGGAGATTATTTGAGTATCTCGTAGA CAAGGCTTTGAGTGTCCCTGTGATTCACCATATTCAATTTCCAAAAGGGGTTCGCAGGGATGACCTGGTCATTGGTGCTGGTACAGATGCTGGAGCTCTT TTAGTAGATGGTCTAGGAGATGGTGTCCTTATTGAAGCCCCAGACCAGGATTTTGATTTTCTCAGGAATACATCTTTCAACTTACTACAAGGTTGCAGAA TGAGAAATACAAAGACGGAATATGTCTCATGCCCTTCATGCGGAAGAACTTTGTTTGATCTTCAAGAGATAAGTGCAGAAATACGAGAAAAGACATCACA CTTGCCTGGTGTCTCGATCGCAATCATGGGTTGCATTGTGAATGGCCCTGGGGAGATGGCTGATGCAGATTTTGGGTACGTCGGTGGTGCTCCTGGAAAG ATTGACCTTTATGTTGGAAAGACGGTGGTCAGGCGTGGAATTGAAATGGAGCATGCCACTGACGCCTTGATCCAGCTGATTAAAGATAATGGCCGCTGGG TAGATCCTCCTGCTGAAGGGTAA
AA sequence Show only first row Show all	>Potri.004G210400.4 pacid=42796238 polypeptide=Potri.004G210400.4.p locus=Potri.004G210400 ID=Potri.004G210400.4.v4.1 annot-version=v4.1 MATGAVPASFSGLKMRESSLGFGKSVDFVRICDIKRIKSGRKRISMIQNSNTGPGIVELQPASEGSPLLVPRKKYCESINKTVRRKTRTVLVGNVPLGSE HPVRVQTMTTTDTKDVAATVEQVMRIADKGADIVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEK LEYTEDDYEKELEHIENVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFVFSMKASNPVVMVQAYRLLVAEMY VQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGMRAAEIQQGVAPFEEKHRHYFDFQRRSGQLPVQKEGE EVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKIVVGMPFKDLATVDSIFLRELPPVDDNDARLALKRLIEVSMGVIAPLSEQLTKPLPNAMVLVNL KELSTGAYKLLPEGTRLVVSLRGDEPCEELEILEHVDATMILHVLPLSEDKSGRVHAARRLFEYLVDKALSVPVIHHIQFPKGVRRDDLVIGAGTDAGAL LVDGLGDGVLIEAPDQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGK IDLYVGKTVVRRGIEMEHATDALIQLIKDNGRWVDPPAEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Potri.004G210400 [exp]	0	1
AT3G19720		DRP5B, ARC5	Dynamin related protein 5B, AC...		Potri.018G027001 [exp]	3.00	0.8851
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.003G184000 [exp]	3.87	0.8535	HSP70.8
AT5G41800			Transmembrane amino acid trans...		Potri.001G093600 [exp]	4.00	0.8179
AT1G80280			alpha/beta-Hydrolases superfam...		Potri.001G174900 [exp]	10.95	0.8373
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.008G077300 [exp]	11.66	0.7918
AT3G24740			Protein of unknown function (D...		Potri.002G216600 [exp]	20.07	0.8238
AT1G21860		SKS7	SKU5 similar 7 (.1)		Potri.010G229500 [exp]	21.44	0.8093
AT1G48840			Plant protein of unknown funct...		Potri.015G046500 [exp]	22.97	0.7610
AT1G22060			unknown protein		Potri.002G091700 [exp]	28.14	0.8100
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Potri.010G090100 [exp]	30.38	0.7584

Compare expression of checked genes

Potri.004G210400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.