Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60490 188 / 4e-59 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G03170 177 / 1e-54 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT5G44130 120 / 1e-32 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT1G03870 117 / 1e-31 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT2G20520 102 / 4e-26 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT2G04780 81 / 8e-18 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT3G46550 71 / 5e-14 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT4G12730 62 / 5e-11 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT3G60900 58 / 2e-09 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT2G45470 56 / 1e-08 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G012200 [exp] 350 / 3e-122 AT5G60490 167 / 5e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.015G129400 [exp] 248 / 7e-83 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G127900 [exp] 238 / 1e-78 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151366 [exp] 231 / 1e-75 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151432 [exp] 228 / 2e-74 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151300 [exp] 226 / 1e-73 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.019G123200 [exp] 224 / 7e-73 AT5G60490 165 / 4e-50 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G014200 [exp] 223 / 1e-72 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151500 [exp] 222 / 3e-72 AT5G60490 167 / 4e-51 FASCICLIN-like arabinogalactan-protein 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036113 [exp] 239 / 1e-78 AT5G03170 173 / 6e-53 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002985 [exp] 232 / 3e-76 AT5G60490 180 / 4e-56 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10002978 [exp] 221 / 8e-72 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 216 / 8e-70 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036112 [exp] 203 / 9e-65 AT5G03170 197 / 1e-62 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002984 [exp] 197 / 4e-62 AT5G03170 192 / 1e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036114 [exp] 195 / 3e-61 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 178 / 4e-55 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10019929 [exp] 176 / 2e-54 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036115 [exp] 159 / 7e-48 AT5G03170 151 / 4e-45 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [poplar] [flax] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Potri.004G210600.1 pacid=42794711 polypeptide=Potri.004G210600.1.p locus=Potri.004G210600 ID=Potri.004G210600.1.v4.1 annot-version=v4.1 ATGAGGCAACAATCTTCAAGCTTATTATTCTCTCTTATCCTTTTCTTTCTCCATTGTACAAAAACGTCAGGTCAGTCACCGGCGGCAGCCCCGGTAATGC CACCACCTACGACCCCAGTGAAGGCACCGCCTACGGCCCCTTCACAGGCACCATCTGCACAGGTAGCAACATCACCTGGCCCCGTTGACGTCATTAAAAT CCTGCAAAAGGCTGGCCACTTCACTGTCTTCGTCCGCCTAATGCAAGCTACAACAGAAGACACTGAGTTAAACAAGGAGCTGAACAAGACAAACAATGGA ATAACAATCTTTGCACCAAGTGACAGCGCATTTTCGAACCTCAAAGCGGGCTTTCTAAACGCTCTAAGCGATGAAGACAAGACTGAGTTGGTGAAGTTTC ATGTACTACCTGCACTTGTATCATCTTCCCAATTCCAGACTGTCAGTAATCCTGTAAGGACACAGGCGGGAACGGGTCCCAGGGTAACACTGAATGTTAC CACCACAGGGAATTTCGTGAACATAACTACAGGGCTGACAAATACAAGCATATCCGGCACCGTATACACTGATAGCCAGCTTGCTATTTATCAAATTGAT AAGGTGCTATTTCCTTTGGACATTTTTACTCCTAAGCCTCCTGCTCCTGCTCCTGCACCCGAACTGGGAAAGCCAAGGAAGGCAGCTCCCGGTGTAGAAA GTCCTACCGCTCCTAAGGATATTTCTGGTGCTCTAACACCACTTATTCTGCATAATAATGCCTTGCTCCTTGCAGTCAGCTGTATGGTTGCTGCAATCTT TTCATGA
AA sequence Show only first row Show all	>Potri.004G210600.1 pacid=42794711 polypeptide=Potri.004G210600.1.p locus=Potri.004G210600 ID=Potri.004G210600.1.v4.1 annot-version=v4.1 MRQQSSSLLFSLILFFLHCTKTSGQSPAAAPVMPPPTTPVKAPPTAPSQAPSAQVATSPGPVDVIKILQKAGHFTVFVRLMQATTEDTELNKELNKTNNG ITIFAPSDSAFSNLKAGFLNALSDEDKTELVKFHVLPALVSSSQFQTVSNPVRTQAGTGPRVTLNVTTTGNFVNITTGLTNTSISGTVYTDSQLAIYQID KVLFPLDIFTPKPPAPAPAPELGKPRKAAPGVESPTAPKDISGALTPLILHNNALLLAVSCMVAAIFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.004G210600 [exp]	0	1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G013300 [exp]	1.73	0.9776
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Potri.006G066900 [exp]	2.44	0.9595
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.002G078600 [exp]	3.74	0.9588	ACO1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G151366 [exp]	3.87	0.9678
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G151432 [exp]	4.00	0.9703
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.013G151300 [exp]	5.47	0.9663
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Potri.005G226700 [exp]	5.47	0.9380
AT1G17200			Uncharacterised protein family...		Potri.011G140200 [exp]	7.74	0.9472
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Potri.003G060000 [exp]	8.12	0.9148
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.004G093500 [exp]	8.77	0.9466

Compare expression of checked genes

Potri.004G210600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.