Plant FIBer expression Database

Potri.004G210800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28430 71 / 2e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G013701
[exp]
37 / 0.0001 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022580
[exp]
95 / 5e-27 AT2G28430 100 / 2e-29 unknown protein
Lus10021477
[exp]
94 / 1e-26 AT2G28430 100 / 3e-29 unknown protein
PFAM info
Representative CDS sequence
>Potri.004G210800.2 pacid=42795528 polypeptide=Potri.004G210800.2.p locus=Potri.004G210800 ID=Potri.004G210800.2.v4.1 annot-version=v4.1
ATGATCAGCATCCTAGCTCAAGAGCGTCTGCTGGGCGCGGCATTGGGAGCTGCGTTTGCGGGTTTCATTGTTTATGAGCAACGAAAGCGCATCTATCAAT
CTATTTCACCCGAACATCCTCAATCCCAGTTGAGAGAGCCCATATTTGGAAAGCAATTTCGTTCAGAGTTCGAACTTTCTTGGAACAAAGCTGTGGACCA
GACATTTGGACCTCTGGTTGCTTCTCTTAATTCACCTGAAGAACTCTCACAAGATGACCCATCAAGGATATAG
AA sequence
>Potri.004G210800.2 pacid=42795528 polypeptide=Potri.004G210800.2.p locus=Potri.004G210800 ID=Potri.004G210800.2.v4.1 annot-version=v4.1
MISILAQERLLGAALGAAFAGFIVYEQRKRIYQSISPEHPQSQLREPIFGKQFRSEFELSWNKAVDQTFGPLVASLNSPEELSQDDPSRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G28430 unknown protein Potri.004G210800
[exp]
0 1
AT3G62810 complex 1 family protein / LVR... Potri.014G129800
[exp]
1.00 0.8602
AT3G52040 unknown protein Potri.001G262000
[exp]
2.00 0.8488
AT2G33255 Haloacid dehalogenase-like hyd... Potri.010G063700
[exp]
5.29 0.7957
AT2G34050 unknown protein Potri.004G052200
[exp]
8.00 0.8081
AT3G22320 RPB5A, NRPD5, N... RNA POLYMERASE II FIFTH LARGES... Potri.006G161600
[exp]
8.66 0.7941 Pt-ATRPABC24.1
AT3G51010 unknown protein Potri.007G018300
[exp]
9.21 0.7937
AT1G21750 ATPDI5, ATPDIL1... ARABIDOPSIS THALIANA PROTEIN D... Potri.002G082100
[exp]
12.24 0.8346 Pt-PDI.4
AT3G04830 Protein prenylyltransferase su... Potri.005G051300
[exp]
13.96 0.7960
AT1G07950 MED22B Surfeit locus protein 5 subuni... Potri.008G080700
[exp]
14.45 0.7900
AT5G39600 unknown protein Potri.012G106900
[exp]
20.24 0.8034

Potri.004G210800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.