Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60680 120 / 8e-35 Protein of unknown function, DUF584 (.1) AT3G45210 106 / 2e-29 Protein of unknown function, DUF584 (.1) AT5G03230 100 / 5e-27 Protein of unknown function, DUF584 (.1) AT2G28400 97 / 1e-25 Protein of unknown function, DUF584 (.1) AT4G04630 81 / 3e-19 Protein of unknown function, DUF584 (.1) AT4G21970 77 / 6e-18 Protein of unknown function, DUF584 (.1) AT3G15040 67 / 2e-13 Protein of unknown function, DUF584 (.1) AT1G11700 65 / 4e-13 Protein of unknown function, DUF584 (.1) AT1G61930 63 / 2e-12 Protein of unknown function, DUF584 (.1) AT4G21930 60 / 2e-11 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014100 [exp] 237 / 1e-80 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 105 / 5e-29 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 100 / 7e-27 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 88 / 9e-22 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.004G014000 [exp] 87 / 2e-21 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 73 / 6e-16 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 72 / 1e-15 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.016G076300 [exp] 69 / 2e-14 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.011G076900 [exp] 50 / 2e-08 AT1G29640 90 / 4e-24 Protein of unknown function, DUF584 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021474 [exp] 153 / 2e-47 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10041309 [exp] 150 / 1e-46 AT5G60680 137 / 5e-42 Protein of unknown function, DUF584 (.1) Lus10000724 [exp] 119 / 4e-34 AT3G45210 111 / 1e-31 Protein of unknown function, DUF584 (.1) Lus10019936 [exp] 84 / 2e-20 AT5G03230 99 / 1e-26 Protein of unknown function, DUF584 (.1) Lus10020043 [exp] 84 / 3e-20 AT4G21970 127 / 1e-37 Protein of unknown function, DUF584 (.1) Lus10006781 [exp] 82 / 8e-20 AT4G21970 128 / 6e-38 Protein of unknown function, DUF584 (.1) Lus10020047 [exp] 77 / 8e-18 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 73 / 5e-17 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1) Lus10040067 [exp] 74 / 4e-16 AT4G21970 98 / 2e-25 Protein of unknown function, DUF584 (.1) Lus10002073 [exp] 74 / 4e-16 AT1G61930 156 / 5e-48 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [poplar] [flax] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Potri.004G211100.1 pacid=42794487 polypeptide=Potri.004G211100.1.p locus=Potri.004G211100 ID=Potri.004G211100.1.v4.1 annot-version=v4.1 ATGGCCACCAGCAACAGCTATTTTGCCAGACAAAAGTACCGATTCCTTTCAACTGACCTCAACCACCATGCGCAACTCTCTCACGACTCACCCTTCGAAC TCGACGAGTCCGACATCTACCACCACACCACTACTCTCTCTATCTCGCCCGACTTCCGCAAGCCAGTCCTCAGTCCGCGACTCGTCAAGAAGTCAACTTC CGCCGCTGCTGCCTGTAGACCGACAGATTCCAGGGAAAAAACAGGCGGAACACCATCGTCGCTGCCGGTGAATATACCGGACTGGTCGAGGATATTGAAG AACGAGTACCGAAGGGGATCTGACGTTGTTGATGATCGTGGTGATGTTGATGATGATGATGATGATGTGGACGGTGATGATTATTTTGATGGCGGAGTGA GGGTCCCACCTCACGAGTTATTGGTGAGGCAGATGGCTAGGTCAAGGATCGCATCCTTCTCGGTTCATGAAGGAATAGGGAGGACTTTGAAAGGGAGGGA TCTTAGTAGGGTCAGAAATGCAATTTGGGAAAAAACTGGCTTCCAAGACTGA
AA sequence Show only first row Show all	>Potri.004G211100.1 pacid=42794487 polypeptide=Potri.004G211100.1.p locus=Potri.004G211100 ID=Potri.004G211100.1.v4.1 annot-version=v4.1 MATSNSYFARQKYRFLSTDLNHHAQLSHDSPFELDESDIYHHTTTLSISPDFRKPVLSPRLVKKSTSAAAACRPTDSREKTGGTPSSLPVNIPDWSRILK NEYRRGSDVVDDRGDVDDDDDDVDGDDYFDGGVRVPPHELLVRQMARSRIASFSVHEGIGRTLKGRDLSRVRNAIWEKTGFQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60680			Protein of unknown function, D...		Potri.004G211100 [exp]	0	1
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.002G090200 [exp]	4.35	0.8716	SHMT4
AT3G58630	Trihelix		sequence-specific DNA binding ...		Potri.001G113600 [exp]	7.07	0.8054
AT2G36220			unknown protein		Potri.016G079500 [exp]	8.71	0.8580
AT3G15040			Protein of unknown function, D...		Potri.006G209500 [exp]	11.95	0.8042
AT3G07790			DGCR14-related (.1)		Potri.014G164200 [exp]	16.24	0.8409
AT1G11240			unknown protein		Potri.011G043400 [exp]	16.88	0.7905
AT4G17960			unknown protein		Potri.001G143600 [exp]	17.29	0.7854
AT1G07310			Calcium-dependent lipid-bindin...		Potri.001G249300 [exp]	18.33	0.8192
AT2G19270			unknown protein		Potri.006G075000 [exp]	19.69	0.8375
AT3G50910			unknown protein		Potri.007G022100 [exp]	22.04	0.8094

Compare expression of checked genes

Potri.004G211100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.