Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28390 739 / 0 SAND family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014400 [exp] 957 / 0 AT2G28390 740 / 0.0 SAND family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000722 [exp] 692 / 0 AT2G28390 656 / 0.0 SAND family protein (.1) Lus10021472 [exp] 625 / 0 AT2G28390 656 / 0.0 SAND family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Potri.004G211200.5 pacid=42796376 polypeptide=Potri.004G211200.5.p locus=Potri.004G211200 ID=Potri.004G211200.5.v4.1 annot-version=v4.1 ATGTCCTCATCCGATTCCAGCTCCTCTTACGCTGACGATCCCAGCCCTAACCCTTTTGATAACCAATTCAAATCCCTAAAACTCGAACAAGGATCCGATA GCACCATCATACAAAAGGACGACGCTATAGCACAGGAAGAAGGAGAGCACGAATCGCTGAGTGAAAACAGCAATAATCACCAAGAAACGAGCCATGATCA AGATGACAGAATTGACGGTGGCGACGTCACCAGTGTTGTGTGGAGGCGGACGAACTCTGAGGTAGAAGTGGACGGGCCTTCCAGCCCTAGCAGCAGTGGA TACGCTGGCGAGAGAGGGAGCAGTGGCGCTAGTGATGATGATGATATACACGAGGTTGCAAATGATGGTGGTATCGATGGGGTTTTTGATTCACAAGCTG CCTGGTTGCCTGGTAAACGACATGTCAATGAGGATGATGCTTCCATATCATGGAGGAAAAGGAAGAAGCATTTTTTTATGTTGAGTCATTCTGGAAAACC AATATATTCCAGATATGGAGATGAACACAAGCTAGCAGGATTTTCAGCTACACTGCAGGCCATAATTTCATTCGTGGAGAATGGGGGGGATCGTATCAAA TTGGTTAGGGCAGGAAAACACCAGGTGGTTTTTCTCGTGAAAGGACCAATTTACCTGGTTTGCATCAGCTGCACGGAAGAGCCATATGAATCGTTGAAGG GGCAATTAGAACTTATTTATGGTCAGATGATACTCATTTTAACAAAGTCAGTAAATAGATGTTTTGAGAAAAATCCGAAGTTTGATATGACGCCATTGCT TGGAGGAACAGATGTTGTCTTCTCATCTCTCATCCATTCATTAAGTTGGAATCCAGCAACTTTTCTTCATGCATACACTTGTCTTCCCCTTGCTTATGCA ACGAGGCAAGCTGCAGGTGCTATATTGCAAGATGTTGCTGATTCTGGTGTCCTCTTTGCAATATTAATGTGCAAACACAAAGTCGTTAGTCTTGTTGGTG CTCAAAAAGCTTCTCTTCATCCTGATGACATGCTGTTACTTTCCAACTTTATAATGTCTTCTGAATCATTTAGGACATCTGAATCTTTCTCGCCAATTTG CCTGCCAAGATATAATCCAATGGCCTTTTTGTATGCTTATGTCCATTATCTTGAAGTTGACACATACTTGATGCTGCTTACCACTAGTTCAGGTGCCTTT TATCATCTTAAGGATTGCAGGATTCGTATTGAAATGGTTCTTCTGAAGTCGAATGTTCTTAGCGAAGTTCAGAGATCCATGCTGGATGGTGGGATACATG TTGAGGATTTGCCTGGCGATCCATTTCCTCGTTCTGGATCTGTTTCTCCTCGTTTAGGGCAGCATCAACAGCCAACCGATTCTCCTGAGAGATTCAGGGA ACCATCTGTTGGGATTGGTGGTCCTGCTGGACTTTGGCATTTCATATATCGCAGCATCTATCTGGATCAATACATATCTTCTGAGTTTTCAGCACCAATT AATAGTCCAGGACAGCAGAAAAGATTGTACAGAGCTTACCAGAAACTGTATGTTTCGATGCACGATAATGGAAATGAGCCCCACAAAACTCAGTTTAGAA GAGATGAAAACTATGTTCTTCTCTGTTGGGTCACCCCGGATTTTGAACTTTATGCGGCATTCGATCCACTTGCAGACAAGGGTTTGGCAATAAAGACTTG CAACAGGGTCTGTCAATGGGTGAAAGATGTTGAAAATGAGATTTTTTTGCTGGGAGCAAGCCCCTTTTCATGGTGA
AA sequence Show only first row Show all	>Potri.004G211200.5 pacid=42796376 polypeptide=Potri.004G211200.5.p locus=Potri.004G211200 ID=Potri.004G211200.5.v4.1 annot-version=v4.1 MSSSDSSSSYADDPSPNPFDNQFKSLKLEQGSDSTIIQKDDAIAQEEGEHESLSENSNNHQETSHDQDDRIDGGDVTSVVWRRTNSEVEVDGPSSPSSSG YAGERGSSGASDDDDIHEVANDGGIDGVFDSQAAWLPGKRHVNEDDASISWRKRKKHFFMLSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDRIK LVRAGKHQVVFLVKGPIYLVCISCTEEPYESLKGQLELIYGQMILILTKSVNRCFEKNPKFDMTPLLGGTDVVFSSLIHSLSWNPATFLHAYTCLPLAYA TRQAAGAILQDVADSGVLFAILMCKHKVVSLVGAQKASLHPDDMLLLSNFIMSSESFRTSESFSPICLPRYNPMAFLYAYVHYLEVDTYLMLLTTSSGAF YHLKDCRIRIEMVLLKSNVLSEVQRSMLDGGIHVEDLPGDPFPRSGSVSPRLGQHQQPTDSPERFREPSVGIGGPAGLWHFIYRSIYLDQYISSEFSAPI NSPGQQKRLYRAYQKLYVSMHDNGNEPHKTQFRRDENYVLLCWVTPDFELYAAFDPLADKGLAIKTCNRVCQWVKDVENEIFLLGASPFSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28390			SAND family protein (.1)		Potri.004G211200 [exp]	0	1
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.007G035200 [exp]	1.00	0.8319	Pt-XLG.2
AT4G19670			RING/U-box superfamily protein...		Potri.015G117600 [exp]	3.46	0.7495
AT1G31870			unknown protein		Potri.003G087200 [exp]	7.07	0.8179
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.017G072100 [exp]	10.00	0.7996
AT1G10390			Nucleoporin autopeptidase (.1....		Potri.001G453200 [exp]	10.09	0.8107
AT1G73460			Protein kinase superfamily pro...		Potri.012G039700 [exp]	19.62	0.7513
AT1G55690			Sec14p-like phosphatidylinosit...		Potri.011G168300 [exp]	26.07	0.6739
AT5G04670			Enhancer of polycomb-like tran...		Potri.010G235900 [exp]	28.14	0.7345
AT3G59670			unknown protein		Potri.007G051100 [exp]	28.58	0.7342
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.002G152100 [exp]	31.60	0.7450	PLDBETA1.1

Compare expression of checked genes

Potri.004G211200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.