Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HB1.7
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60690 1376 / 0 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT2G34710 1118 / 0 HD ATHB14, PHB-1D, ATHB-14, PHB PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G30490 1098 / 0 HD ATHB9, PHV PHAVOLUTA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G52150 1078 / 0 HD ATHB15, ICU4, CNA, ATHB-15 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) AT4G32880 1054 / 0 HD ATHB8, ATHB-8 homeobox gene 8 (.1) AT1G79840 84 / 2e-16 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT5G52170 74 / 2e-13 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G04890 72 / 1e-12 HD PDF2 protodermal factor 2 (.1) AT4G21750 70 / 4e-12 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 68 / 2e-11 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014500 [exp] 1572 / 0 AT5G60690 1382 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.001G372300 [exp] 1186 / 0 AT2G34710 1358 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.011G098300 [exp] 1177 / 0 AT2G34710 1350 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.001G188800 [exp] 1103 / 0 AT1G52150 1476 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.003G050100 [exp] 1101 / 0 AT1G52150 1488 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.006G237500 [exp] 1078 / 0 AT4G32880 1412 / 0.0 homeobox gene 8 (.1) Potri.018G045100 [exp] 1077 / 0 AT4G32880 1400 / 0.0 homeobox gene 8 (.1) Potri.003G052400 [exp] 101 / 7e-22 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.004G020400 [exp] 98 / 7e-21 AT4G04890 1185 / 0.0 protodermal factor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021470 [exp] 1409 / 0 AT5G60690 1419 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10000719 [exp] 1409 / 0 AT5G60690 1409 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10038449 [exp] 1107 / 0 AT2G34710 1336 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10023357 [exp] 1103 / 0 AT2G34710 1316 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10037568 [exp] 1080 / 0 AT1G52150 1441 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10011426 [exp] 1003 / 0 AT4G32880 1338 / 0.0 homeobox gene 8 (.1) Lus10011616 [exp] 999 / 0 AT4G32880 1293 / 0.0 homeobox gene 8 (.1) Lus10002037 [exp] 791 / 0 AT1G52150 1049 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10007650 [exp] 87 / 2e-17 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10031892 [exp] 84 / 2e-16 AT1G73360 618 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.004G211300.1 pacid=42796139 polypeptide=Potri.004G211300.1.p locus=Potri.004G211300 ID=Potri.004G211300.1.v4.1 annot-version=v4.1 ATGGCCATGGAAGTGGCCCCTCTGCACCGAGAGAGCAGCAGTAGTGGGAGCATAAACAAGCACCTTACTGATGATGGGAAGTATGTTCGGTACACAGCAG AGCAAGTGGAGGCTCTTGAAAGAGTTTATGCGGAGTGCCCTAAGCCCAGCTCTTTGCGTAGGCAACAATTGATTAGAGAGTGCCCCATTTTAGCTAATAT TGAGCCGAAGCAGATCAAAGTCTGGTTTCAAAATCGCAGGTGTAGAGAGAAGCAGAGAAAAGAGTCCTCAAGACTCCAGACTGTGAACAGGAAATTGACA GCAATGAATAAGCTGTTGATGGAGGAGAATGATCGCCTTCAAAAACAGGTGTCCCAGCTGGTGTGCGAAAATGGTTTCATGCGGCAACAACTGCAAACTG CACCAACAGCAACTGATGCAAGCTGTGACTCTGTGGTTGCCACTCCACAACATTCACTAAGAGATGCCAATAACCCTGCTGGACTCCTCTCAATAGCTGA GGAGACCTTGTCAGAGTTCCTTGCAAAGGCCACAGGAACTGCTCTTGAGTGGGTCCAGATGCCTGGAATGAAGCCTGGTCCGGATTCGATTGGGATTTTT TCCATTTCACAAAGGTGCGGTGGAGTGGCAGCAAGAGCCTGCGGTCTTGTAAGTTTAGAGCCTAAAAAGATTGCAGAGATCCTTAAAGATCGTTCATCTT GGTTCCGTGATTGTCGGAACCTTGAAGTTTTCACTATGTTTCCTGCTGGAAATGGTGGAACAATTGAACTAGTGTACAGTCAGATATATGCTCCAACTAC TCTTGCTCCAGCACGGGATATGTGGACTCTGAGATACACTACAAGTTTAGAGAATGGCAGCCTTGTGGTCTGTGAGAGATCACTTTCTGGTTATGGTGCT GGCCCCGATGCAGCTGCCGCTGCCCAGTTTGTGAGGGCTGAAATGCTTCCTAGTGGCTATTTGATAAGGCCATGTGAAGGAGGGTCAATTATCCACATCG TGGATCACCTGAATCTTCAGGCATGGAGTGTGCCTGAGGTGCTTCGACCACTTTATGAATCATCAAAAGCAGTGGCACAGAAAATGACCATTGCGGCACT GCGTTATGTCAGGCAAGTAGCTCATGAAACCAGTGGTGAGGTGGTGTATGGTTTGGGCAGGCAACCAGCTGTTCTGAGAACCTTTAACCAAAGATTAAGC AGAGGTTTCAATGATGCCATCAATGGGTTTAATGATGATGGCTGGTCACTGATGAATGCGGATGGAGCTGAGGATGTAATAATTGCAGTTAACTCAACCA AGAATTTGATTGGTGCTAATAATTCTGCTCATTCTCTTTCGTTCTTGGGAGGGATTCTTTGTGCGAAAGCTTCCATGCTACTGCAAAATGTGCATCCTGC TGTGCTGGTCTGTTTCCTAAGGGAGCATCACGCTGAGTGGGCTGATTTCAGTGTTGATGCCTATTCTGCTGCATTGTGGAAGGCTGGTTCATATGCATAT CCAGGAATGAGGCCCATGAGGTTTACTGGGAGCCAAATCACCATGCCACTGGGCCACACAATTGAACAAGAAGACTTGCTTGAAGTTATTCGACTTGAAG GCCATTCTTTTGCACAAGAAGATGCTTTTGTTTCACAGGACATCCATCTCCTACAGATATGTAGTGGAATTGATGAGAATGCTGTTGGAGCCTGTTCTGA ACTAGTTTTTGCTCCAATTGATGAAACGTTTCCAGATGATGCTCCACTGCTACCTTCTGGTTTCCGCATCATTTCTCTGGAATCAAAAGCAAAGGATACA CAGGAGGTATTGACTACAAATTGTACTCTGGATCTAACATCAAGTCTTGAAGCGGGGCTGGCAATAAACCACACTGCAGTGGATGGCTCATCGTGTCATA GTTTGCGATCAGTGTTGACTATTGCCTTCCAGTTCCCTTTTGAGAGCAATCTACAGGATAATGTTGCCACCATGGCACGTCAGTACGTACGTAGTGTGAT TTCATCTGTCCAGAGGGTTGCCATGGCCATATCTCCATCAGGATTGAGTCCAGTTTTGGGACCAAAGCTATCTGCAGGATCTCCTGAAGCTCTAACCTTG GCTCACTGGATCTGCCAAAGTCACAGTTACCATTTAGGAGCAGAATTACTGAGATCTGATTCTGTGGGTGGAGATTCTGTCCTGAAACATCTATGGCATC ATCCAGATGCAATTTTATGTTGTTCATTGAAGTCGCTGCCAGTTTTCATCTTTGCCAATCAGGCAGGGCTTGACATGCTGGAGACAACTCTAGTGGCTCT ACAAGATATTACACTGGATAAGATATTCAATGAATCTGGACGCCAGGCATTGTATACAGAATTTGCAAAGTTAATGCAACAGGGATTTGCATGCTTGCCT GCTGGAATCTGCATGTCAACAATGGGGCGTAATGTTTCATATGAGCAAGCTGTTGCTTGGAAAGTGCTATCTGCAGAAGAGAACGCTGTTCATTGCATTG CTTTCTCTTTTGTAAACTGGTCTTTTTTGTGA
AA sequence Show only first row Show all	>Potri.004G211300.1 pacid=42796139 polypeptide=Potri.004G211300.1.p locus=Potri.004G211300 ID=Potri.004G211300.1.v4.1 annot-version=v4.1 MAMEVAPLHRESSSSGSINKHLTDDGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILANIEPKQIKVWFQNRRCREKQRKESSRLQTVNRKLT AMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTAPTATDASCDSVVATPQHSLRDANNPAGLLSIAEETLSEFLAKATGTALEWVQMPGMKPGPDSIGIF SISQRCGGVAARACGLVSLEPKKIAEILKDRSSWFRDCRNLEVFTMFPAGNGGTIELVYSQIYAPTTLAPARDMWTLRYTTSLENGSLVVCERSLSGYGA GPDAAAAAQFVRAEMLPSGYLIRPCEGGSIIHIVDHLNLQAWSVPEVLRPLYESSKAVAQKMTIAALRYVRQVAHETSGEVVYGLGRQPAVLRTFNQRLS RGFNDAINGFNDDGWSLMNADGAEDVIIAVNSTKNLIGANNSAHSLSFLGGILCAKASMLLQNVHPAVLVCFLREHHAEWADFSVDAYSAALWKAGSYAY PGMRPMRFTGSQITMPLGHTIEQEDLLEVIRLEGHSFAQEDAFVSQDIHLLQICSGIDENAVGACSELVFAPIDETFPDDAPLLPSGFRIISLESKAKDT QEVLTTNCTLDLTSSLEAGLAINHTAVDGSSCHSLRSVLTIAFQFPFESNLQDNVATMARQYVRSVISSVQRVAMAISPSGLSPVLGPKLSAGSPEALTL AHWICQSHSYHLGAELLRSDSVGGDSVLKHLWHHPDAILCCSLKSLPVFIFANQAGLDMLETTLVALQDITLDKIFNESGRQALYTEFAKLMQQGFACLP AGICMSTMGRNVSYEQAVAWKVLSAEENAVHCIAFSFVNWSFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.004G211300 [exp]	0	1	Pt-HB1.7
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.009G014500 [exp]	1.00	0.8103	Pt-HB1.8
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Potri.002G048500 [exp]	1.41	0.7761
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.012G087100 [exp]	3.16	0.7481
AT5G59790			Domain of unknown function (DU...		Potri.010G209600 [exp]	6.32	0.7115
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Potri.008G158800 [exp]	6.70	0.7349	AGO906,Pt-AGO1.2
AT3G06150			unknown protein		Potri.010G030900 [exp]	6.70	0.7262
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.004G212700 [exp]	7.74	0.7566
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.008G193500 [exp]	10.48	0.7305	ARL1.3
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.009G078700 [exp]	12.64	0.7390
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Potri.010G067900 [exp]	12.96	0.7469

Compare expression of checked genes

Potri.004G211300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.