Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07990 990 / 0 SIT4 phosphatase-associated family protein (.1) AT3G45190 908 / 0 SIT4 phosphatase-associated family protein (.1) AT2G28360 852 / 0 SIT4 phosphatase-associated family protein (.1) AT1G30470 728 / 0 SIT4 phosphatase-associated family protein (.1.2.3) AT1G08005 38 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014700 [exp] 1365 / 0 AT1G07990 1019 / 0.0 SIT4 phosphatase-associated family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037400 [exp] 994 / 0 AT1G07990 976 / 0.0 SIT4 phosphatase-associated family protein (.1) Lus10021468 [exp] 858 / 0 AT3G45190 851 / 0.0 SIT4 phosphatase-associated family protein (.1) Lus10016088 [exp] 823 / 0 AT3G45190 840 / 0.0 SIT4 phosphatase-associated family protein (.1) Lus10023354 [exp] 714 / 0 AT1G30470 918 / 0.0 SIT4 phosphatase-associated family protein (.1.2.3) Lus10038452 [exp] 660 / 0 AT1G30470 842 / 0.0 SIT4 phosphatase-associated family protein (.1.2.3) Lus10016089 [exp] 76 / 7e-17 AT2G28360 80 / 1e-19 SIT4 phosphatase-associated family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04499 [poplar] [flax] SAPS SIT4 phosphatase-associated protein
Representative CDS sequence Show only first row Show all	>Potri.004G211500.1 pacid=42794665 polypeptide=Potri.004G211500.1.p locus=Potri.004G211500 ID=Potri.004G211500.1.v4.1 annot-version=v4.1 ATGTTTTGGAAGCTCACCGCTCTCTCCACCTCCTCTCCTGTGGAGTCATTATTAGACAAAGATAATTTCACGTTGGAAGAGCTTCTTGACGAGGAAGAAA TAATCCAAGAATGCAAAGCTTTGAACACCCGACTTATCAATTTTCTGCGAGATAGAGCCCAAGTGGAGCAGTTGCTCAGATACATTATCGAGGAACCTTC AGAGGATGCTGAAAGCAAACTAGCCTTCAAGTTCCCCTTCATTGCTTGTGAGATATTTACATGTGAAATTGATGTTATTCTTAAAACTTTAGTGGAGGAA GAGGAGTTGATGAACTTACTCTTCTCTTTCTTGGAACCAAATCGGTCTCATAGTGCCTTGCTTGCTGGGTATTTCAGCAAAGTTGTTGTTTGCCTCATGT TACGCAAGACAGTCCCACTTATGAACTATGTCCAAGCCCATCAGGATGTTTTCCGCCAACTTGTTGATTTAATTGGAATAACATCCATTATGGAGGTTTT GGTTAGGCTGGTAGGAGCTGATGACCATGTTTATCCTAATTTTACTGATGTGATGCAATGGTTGGCTGATAGCAATTTGCTAGAAATGATTGTGGACAAA TTGAGTCCTTCTAATCCACCTGAAGTTAATGCTAATGCAGCAGAAACATTATGTGCAATAACTAGAAATGCTCCATCGGCCTTGGCTACTAAACTCTCTA GTCCAAGTTTTGTGGCAAGGATATTTGGTCATGCATTGGAAGATTCACATTCAAAATCTGGTCTTGTCAATTCACTTTCTGTTTGTATATCCTTACTGGA TCCAAAAAGATCAGCAATGTCTTCTCCCTTGATGCATTCTTTTCGAAGCCACCATATGTACGAGTCTCCAATCCCTGTAAATCCAGAGACTATCAGTGCA ATGTTACCCAAACTTGGTAACTTGCTTCTGCTATTGAATGTCCGGTCTGATGAGAGGATTTTACCTACAACATATGGAGTACTGAAGCCTCCTCTTGGGA AACATTGTCTTAAGATTGTGGAATTCATTGCGGTGCTACTAAGAGCTGGAAACGAAGCCACTGAGATGGAGTTAGTCAGCTCGGGAACCATCAAAAGAAT TCTTAATCTGTTCTTCGAGTACCCTTACAATAACGCTTTGCATCATCATGTAGAGAGTATCATAATGTCTTGTTTGGAGATCAAGAGTGATGCTATGGTT GATCATCTTCTTCAAGAGTGTGATTTGATTGGAAAATTTCTCCAAACAGATAAAAACCCTTTAATATCCGGTGATAATAAGCCAACGGTTCCTGCTGCTG GAAAACAAGCACCACGTGCAGGAAACCTCGGACACATTACACGAATTTCTAATAAGCTTTTTCAGCTGGGAAACATCAGTAGCCGCATTCAGACCTATCT ACAGGAAAATAGTGAGTGGATGGAGTGGCAAGCCACTGTTTTGCAAGAGCGTAATGCAGTTGAAAATGTCTACCGATGGGCTTGCGGCCGCCCAACAGCA TTGCAAGATAGGACGCGTGACAGTGACGACGATGACCTTCATGACCGAGATTATGATGTGGCAGCTCTAGCCAATAATTTAAGTCAGGCTTTTAGATACA AAATATATGGGAACGAGGATAATGAAGAGGACAATGGGAGCCTTGATCGGGATGATGAGGATGTCTACTTTGATGACGAGTCTGCCGAAGTTGTTATATC ATCCCTTAGGCTTGGCGATGACCAAGGGAGCAGTCTGTTCACAAATTCAAACTGGTTTGCATTCCAAGATGATAGAATTGGCGATTCACTTGTGAGCACA TCGCCTGGAGAGATGATGGATCAGATTAACTTAAATGGAAATGCTAATGGCGGTAACAGCGGTAGTGATGATGAGGTGGTGGTGGGAGAGGAAGATGAGT TGACCGAAAGCAAGGATTCTGTCAATGGCACATCCACTTCCAACACAAACCTCATCGATCAATTTCCTGGGAGTGGTCTGGTTTCGCAAAGCGGTGATGC AAATGCCCCTGATACAAGCTTTTTCAAATATGAGACATCAGTCAAAGAAGAATTGTTTGGAGATAGGCCTTTACCTGAATGGGTAGGGTGGGGAGAGTCA TCAGATTTGCAAGCAGGGGGGTCAACTGTGAATCCATTTGAAGATCATGACAACTCTGATGACTCTCTTTCCAGCCAAGCGAAAACAGTAACACCTGGTG CCAGTTCCCCATCAAGTGGGGAATCCATACTTCCAAATGGCTTATCTCCCTCCAAGGATTCTAGTGATGCATCCGTTAGCAGTGATTCAAGTAAAAAATC TCCCACCATGCCTTCTTTGTTTGAAGAGGATGTTGAATTTGTTGGTGTTGAGTTAGAAGGCACTGAAAAGGCAATGGAACAAGCGCTCAAGGAGGGGATA GTTGGTGAAGCAGGGCCTCTGAAGAGGAATATTTCACCGAAGGTTCCAGAGAAGGAGAATTCCGATACTGCCGAGGTTGATAATAAAGAGTTCAATGATG CAAACTATTGGAGGATTGATCAATAG
AA sequence Show only first row Show all	>Potri.004G211500.1 pacid=42794665 polypeptide=Potri.004G211500.1.p locus=Potri.004G211500 ID=Potri.004G211500.1.v4.1 annot-version=v4.1 MFWKLTALSTSSPVESLLDKDNFTLEELLDEEEIIQECKALNTRLINFLRDRAQVEQLLRYIIEEPSEDAESKLAFKFPFIACEIFTCEIDVILKTLVEE EELMNLLFSFLEPNRSHSALLAGYFSKVVVCLMLRKTVPLMNYVQAHQDVFRQLVDLIGITSIMEVLVRLVGADDHVYPNFTDVMQWLADSNLLEMIVDK LSPSNPPEVNANAAETLCAITRNAPSALATKLSSPSFVARIFGHALEDSHSKSGLVNSLSVCISLLDPKRSAMSSPLMHSFRSHHMYESPIPVNPETISA MLPKLGNLLLLLNVRSDERILPTTYGVLKPPLGKHCLKIVEFIAVLLRAGNEATEMELVSSGTIKRILNLFFEYPYNNALHHHVESIIMSCLEIKSDAMV DHLLQECDLIGKFLQTDKNPLISGDNKPTVPAAGKQAPRAGNLGHITRISNKLFQLGNISSRIQTYLQENSEWMEWQATVLQERNAVENVYRWACGRPTA LQDRTRDSDDDDLHDRDYDVAALANNLSQAFRYKIYGNEDNEEDNGSLDRDDEDVYFDDESAEVVISSLRLGDDQGSSLFTNSNWFAFQDDRIGDSLVST SPGEMMDQINLNGNANGGNSGSDDEVVVGEEDELTESKDSVNGTSTSNTNLIDQFPGSGLVSQSGDANAPDTSFFKYETSVKEELFGDRPLPEWVGWGES SDLQAGGSTVNPFEDHDNSDDSLSSQAKTVTPGASSPSSGESILPNGLSPSKDSSDASVSSDSSKKSPTMPSLFEEDVEFVGVELEGTEKAMEQALKEGI VGEAGPLKRNISPKVPEKENSDTAEVDNKEFNDANYWRIDQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07990			SIT4 phosphatase-associated fa...		Potri.004G211500 [exp]	0	1
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.006G200200 [exp]	3.46	0.7000
AT2G01710			Chaperone DnaJ-domain superfam...		Potri.002G105500 [exp]	3.87	0.6856
AT5G06440			unknown protein		Potri.016G067000 [exp]	5.91	0.6746
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Potri.016G091700 [exp]	8.36	0.6417	Pt-TKI1.1
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.004G225800 [exp]	12.96	0.6792
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.005G129500 [exp]	13.74	0.6487
AT4G26450		WIP1	unknown protein		Potri.001G472600 [exp]	16.73	0.6964
AT5G58900	MYB		Homeodomain-like transcription...		Potri.009G042600 [exp]	19.49	0.5876
AT4G13110			BSD domain-containing protein ...		Potri.008G199100 [exp]	20.19	0.6598
AT3G03940			Protein kinase family protein ...		Potri.019G034500 [exp]	20.34	0.5916

Compare expression of checked genes

Potri.004G211500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.