Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ARF10.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28350 777 / 0 ARF ARF10 auxin response factor 10 (.1) AT4G30080 719 / 0 ARF ARF16 auxin response factor 16 (.1) AT1G77850 365 / 1e-117 ARF ARF17 auxin response factor 17 (.1) AT5G62000 259 / 4e-75 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 254 / 8e-75 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G60450 256 / 2e-74 ARF ARF4 auxin response factor 4 (.1) AT1G19850 257 / 5e-74 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G37020 254 / 8e-74 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G30330 254 / 9e-73 ARF ARF6 auxin response factor 6 (.1.2) AT2G33860 246 / 4e-72 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014800 [exp] 1135 / 0 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.010G223200 [exp] 838 / 0 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.008G039000 [exp] 836 / 0 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.006G127500 [exp] 784 / 0 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.016G090300 [exp] 767 / 0 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.002G089900 [exp] 382 / 3e-124 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.005G171300 [exp] 372 / 4e-120 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.009G011800 [exp] 270 / 9e-80 AT5G60450 830 / 0.0 auxin response factor 4 (.1) Potri.003G142100 [exp] 263 / 7e-78 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026510 [exp] 748 / 0 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10019940 [exp] 719 / 0 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10021467 [exp] 672 / 0 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 617 / 0 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 613 / 0 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10024753 [exp] 380 / 4e-123 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10009770 [exp] 377 / 5e-122 AT1G77850 496 / 4e-170 auxin response factor 17 (.1) Lus10024754 [exp] 372 / 2e-120 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10016091 [exp] 351 / 3e-116 AT4G30080 315 / 7e-103 auxin response factor 16 (.1) Lus10016090 [exp] 297 / 2e-94 AT2G28350 266 / 3e-83 auxin response factor 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.004G211700.2 pacid=42795004 polypeptide=Potri.004G211700.2.p locus=Potri.004G211700 ID=Potri.004G211700.2.v4.1 annot-version=v4.1 ATGAAAAAGACAGATAAGAAGAGCTTGGATCCACAACTATGGCAAGCCTGTGCAGGAAGCATGGTACAAATCCCTCCACTAAACACTAAAGTCTTCTACT TTCCACAAGGCCACGCCGAGCACTCTCAATCCCCCGTCGATTTCCCCCAAAGAATCCCTTCTCTCGTTCTCTGCCGCGTTGCCTCTGTCAAATTCCTCGC CGACCCTGGTACTGATGAGGTATTCGCCAAGATCAGCCTTGTTCCTTTACCAGACGCTGACCTTGATATCTCTCAAGATGTGGACATTTGTGGTGATGGG AACGACAGTAACAACGCAGAGAAGCCGGCCTCTTTTGCAAAGACACTAACTCAATCTGATGCCAACAATGGTGGGGGTTTCTCTGTGCCTAGATACTGTG CGGAGACGATTTTCCCAAGGCTGGACTACTCCGCGGATCCTCCCGTGCAGACTCTGATTGCTAAAGATGTGCACGGTGAGGTGTGGAAGTTTAGGCATAT TTATAGAGGGACACCAAGGAGGCATTTGTTGACTACTGGATGGAGCACCTTTGTTAACCAGAAGAAATTGGTTGCCGGGGATTCAATTGTGTTCTTGAGG GCTGAAAATGGCGATCTTTGTGTTGGAATTCGCCGTGCCAAGAGGGGGGTTGGAATTGGGAGCGGACCTGAATCATCACCATCACACATTGGGTGGAATT CGAACAACGCTACCTCTGCTAACCCATATGGTGGTTTCTCACTTTCTGTGAAGGAGGATGAGATGCGAAATGGGGGAGTGAAGGGAAGGGGAAGAGTGAA GTCTGAAGAGGTTTTGGAAGCTGCTGGTCTTGCTGCTAATGGAAATCCTTTTCAAGTCGTTTATTATCCACGAGCAAGCACGCCAGAGTTTTGTGTTAAG GCCTCTTCAGTAAGGGCGGCAATGAGGACCTGTTGGTGCTCTGGGATGAGGTTCAAGATGGCTTTTGAAACAGAGGACTCTTCACGGATTAGCTGGTTTA TGGGGACTGTTGCCTCTGTTCAGGTTGCTGATCCTGACCGATGGCCTAACTCTCCATGGCGTCTTCTCCAGGTGACATGGGATGAGCCAGATTTACTACA AACTGTAAAGTGTGTCAGCCCATGGCTGGTTGAATTGGTGTCAAATATGCCAGTCATCCACCTATCACCCTTCTCACCACCAAGAAAGAAGTTGCGATTC CCGCAACAGTTAGACTTTCCCCTTGATGGCCAATTTCAATTGCCTTCATTTTCAGGCAACCCCCTTGGGCCCAGCAGCCCTTTGTGTTGTCTATCCGATA ACACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGAATATCATTATCAGATTTCCAGTTTAAAAAAAAGCTGCAGTCAGGGCTGTTTCTGTC CAGTCTCCAGAGGTTCAATCCACGCACTAAAAATTCTGAAAATTACCCGACAGGACACCCTGACAGCAATAAGAATTTATCTTGCTTATTAACAAAGGGG AGCAGCAATCCAAAGTTGGAGAAATCTGATAATGCAAAGAAACACCAGTTTCTGCTCTTTGGTCAACCAATACTTGTCGAGCAGCAGATATCTCATAGCT GTTCCGCTGATGCATTCCCGCAAGTTGTTAATGAGAGAAATTCATCTGATAGTAACAGAGAAAAAAATTCTGATGTTTTACGATCAGCACCTGGGAAACA AATTTCACAAGAAAAGTCGTGCACTACTGGGTTTTCATGGCACCAAAGTCTTCAGAATACCAGTGAAAATGGCATGGATACTGGTCACTGCAAGGCTTTT TTGGAGTCAGAAGACTTGGGGCGGACCCTTGACCTCTCTGCACTTCATTCTTATGAAGAGCTACGCAGGAAGCTGGCCATCATGTTTGGAATAGAGAGAT CAGATATGTTGAGCCATGTTCTCTATCGAGATGTGACAGGTGCTGTTAAACAGATTGGAGATGAACCATTCAGTGTTTTTATGAAAACCGCAAAAAGATT GACGATTCTGATGAACCGGGCTAGCGGCAACAGTGTTGGGAGGAGGACATGGATCACAGGGATGCGAAATGCTGAGAATGGACTAGAGGCTCCAAATAAG ACCGGTCCCTTGAGCATATTTGCCTAA
AA sequence Show only first row Show all	>Potri.004G211700.2 pacid=42795004 polypeptide=Potri.004G211700.2.p locus=Potri.004G211700 ID=Potri.004G211700.2.v4.1 annot-version=v4.1 MKKTDKKSLDPQLWQACAGSMVQIPPLNTKVFYFPQGHAEHSQSPVDFPQRIPSLVLCRVASVKFLADPGTDEVFAKISLVPLPDADLDISQDVDICGDG NDSNNAEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTLIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR AENGDLCVGIRRAKRGVGIGSGPESSPSHIGWNSNNATSANPYGGFSLSVKEDEMRNGGVKGRGRVKSEEVLEAAGLAANGNPFQVVYYPRASTPEFCVK ASSVRAAMRTCWCSGMRFKMAFETEDSSRISWFMGTVASVQVADPDRWPNSPWRLLQVTWDEPDLLQTVKCVSPWLVELVSNMPVIHLSPFSPPRKKLRF PQQLDFPLDGQFQLPSFSGNPLGPSSPLCCLSDNTPAGIQGARHAQFGISLSDFQFKKKLQSGLFLSSLQRFNPRTKNSENYPTGHPDSNKNLSCLLTKG SSNPKLEKSDNAKKHQFLLFGQPILVEQQISHSCSADAFPQVVNERNSSDSNREKNSDVLRSAPGKQISQEKSCTTGFSWHQSLQNTSENGMDTGHCKAF LESEDLGRTLDLSALHSYEELRRKLAIMFGIERSDMLSHVLYRDVTGAVKQIGDEPFSVFMKTAKRLTILMNRASGNSVGRRTWITGMRNAENGLEAPNK TGPLSIFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28350	ARF	ARF10	auxin response factor 10 (.1)		Potri.004G211700 [exp]	0	1	ARF10.2
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Potri.017G057800 [exp]	6.40	0.9079
AT1G28320		DEG15	protease-related (.1)		Potri.011G056100 [exp]	18.97	0.8651
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	24.37	0.8791
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Potri.003G133700 [exp]	24.43	0.8739
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Potri.014G006700 [exp]	27.65	0.8546
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Potri.010G157500 [exp]	31.40	0.8424
					Potri.001G033500 [exp]	39.29	0.8634
					Potri.002G115600 [exp]	46.18	0.8464
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.009G092100 [exp]	51.18	0.8624
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Potri.010G160100 [exp]	64.15	0.8498

Compare expression of checked genes

Potri.004G211700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.