Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06050 536 / 0 AtOPR3, DDE1, OPR3, OPDA-REDUCTASE DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) AT1G76690 383 / 3e-132 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) AT1G76680 380 / 4e-131 OPR1, ATOPR1 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) AT1G09400 330 / 4e-112 FMN-linked oxidoreductases superfamily protein (.1) AT1G18020 282 / 4e-94 FMN-linked oxidoreductases superfamily protein (.1) AT1G17990 282 / 4e-94 FMN-linked oxidoreductases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142800 [exp] 696 / 0 AT2G06050 603 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.018G065600 [exp] 675 / 0 AT2G06050 599 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.013G103000 [exp] 395 / 6e-137 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102800 [exp] 390 / 7e-135 AT1G76690 576 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102750 [exp] 388 / 3e-134 AT1G76690 580 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102700 [exp] 385 / 1e-132 AT1G76690 629 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102900 [exp] 381 / 1e-131 AT1G76690 571 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.003G004200 [exp] 377 / 7e-130 AT1G76680 558 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.003G004600 [exp] 373 / 2e-128 AT1G76680 559 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028663 [exp] 551 / 0 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10000966 [exp] 546 / 0 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10013218 [exp] 387 / 8e-134 AT1G76690 553 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001276 [exp] 376 / 2e-129 AT1G76680 597 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10009473 [exp] 375 / 5e-126 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001275 [exp] 353 / 3e-120 AT1G76680 544 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10001274 [exp] 345 / 9e-118 AT1G76690 526 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10030737 [exp] 186 / 2e-56 AT1G76680 258 / 1e-84 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00724 [poplar] [flax] Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family
Representative CDS sequence Show only first row Show all	>Potri.004G212100.1 pacid=42795834 polypeptide=Potri.004G212100.1.p locus=Potri.004G212100 ID=Potri.004G212100.1.v4.1 annot-version=v4.1 ATGGCTGAAGAAGGGATCTCTCTGTTTTCTCCTTACAAAATGGGCAAGTTCAGCCTCTCTCACAGGGTGGTGCTAGCGCCCTTGACAAGATGCAGGGCGT TAGGTGGGATACCGGGAGATGCTCTGGTGGAGTACTACACGCAGAGGTCAACTCCTGGCGGATTTCTCATCACTGAAGGCACTCTCATCTCTCCAACAGC TCCTGGGTTTCCCCATGTGCCTGGAATTTACTCAGATGCTCAAGTGGAGGCATGGAAGAAGGTAGTGAATGCGGTTCATGCCAAAGGGAGCATCATATTC TGTCAACTGTGGCACGTTGGCCGTGCATCTCATCAAGTTTATCAACCTGGTGGGGCTGCAGCAATTTCATCAACAAACAAGGCCATCTCAAACAGGTGGA GAATTCTCATGCCAGATGGGACCTATAGCACATGCTCAGCACCTCGAGCCTTGGAAACCTCTGAAATACTGGAGGTGGTGGAGCATTATAGCCAGGCAGC CTTGAATGCCATTCGAGCGGGTTTTGATGGGGTTGAGATCCATGGGGGTTATGGTTACCTTATTGATCAATTCTTAAAAGATGGGATCAATAACAGAATA GATGAGTATGGTGGATCAATGGAAAACCGTTGCAGATTCTTAATGCAGGTGATTCAGGCAGTAGTCTCAGCTGTCGGCGCAGAACGAGTAGCTTTTCGAA CGTCCCCTGCAATCGATCACAATGATGCCACAGACTCTGATCCACTCAACTTAGGCCTTTCAGTGATTGAGAGAATTAACAAACTCCAGCTACAGGTGGG CTCAAAACTCACCTACCTCCACGTCCAAAGAGAGTTAGGCAGACCTGGCACCGAAGATGTGGTGGCGCAAACGACCAGGACTTGGAGGAGGGCATATCAG GGTACCTTCATATGCAGTGGTGGGTTCACTAGGGAGCTGGGAACACAAGCTGTAGCTGAAGGTGACGCAGATTTGGTATCCTACGGTAGAGATTTTATCT CAAACCCAGACTTGGTTTTGAGATTGAAGCTTAATGCACCCCTGAATAAGTATATCAGGGAGACTTTCTACACCCACGATCCCATTGTTGGGTACACAGA TTACCCTTTCCTGAGCAAAGCTAGTGGATGA
AA sequence Show only first row Show all	>Potri.004G212100.1 pacid=42795834 polypeptide=Potri.004G212100.1.p locus=Potri.004G212100 ID=Potri.004G212100.1.v4.1 annot-version=v4.1 MAEEGISLFSPYKMGKFSLSHRVVLAPLTRCRALGGIPGDALVEYYTQRSTPGGFLITEGTLISPTAPGFPHVPGIYSDAQVEAWKKVVNAVHAKGSIIF CQLWHVGRASHQVYQPGGAAAISSTNKAISNRWRILMPDGTYSTCSAPRALETSEILEVVEHYSQAALNAIRAGFDGVEIHGGYGYLIDQFLKDGINNRI DEYGGSMENRCRFLMQVIQAVVSAVGAERVAFRTSPAIDHNDATDSDPLNLGLSVIERINKLQLQVGSKLTYLHVQRELGRPGTEDVVAQTTRTWRRAYQ GTFICSGGFTRELGTQAVAEGDADLVSYGRDFISNPDLVLRLKLNAPLNKYIRETFYTHDPIVGYTDYPFLSKASG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Potri.004G212100 [exp]	0	1
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Potri.009G059400 [exp]	2.23	0.7239
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Potri.001G171800 [exp]	2.82	0.7685	PDF1.2
AT3G56720			unknown protein		Potri.016G036000 [exp]	4.00	0.7101
AT2G05710		ACO3	aconitase 3 (.1)		Potri.014G153400 [exp]	6.48	0.7182
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.010G158100 [exp]	11.22	0.6958
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G008600 [exp]	13.49	0.7132
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Potri.013G103551 [exp]	21.84	0.7465
AT3G16230			Predicted eukaryotic LigT (.1....		Potri.001G186600 [exp]	26.00	0.6819
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Potri.002G161700 [exp]	27.12	0.6478
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Potri.001G349400 [exp]	33.70	0.7334

Compare expression of checked genes

Potri.004G212100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.