Plant FIBer expression Database

Potri.004G212500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1)
AT3G61620 109 / 1e-28 RRP41 3'-5'-exoribonuclease family protein (.1.2)
AT3G46210 74 / 2e-15 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
AT5G14580 48 / 3e-06 polyribonucleotide nucleotidyltransferase, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G010600
[exp]
442 / 4e-159 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1)
Potri.014G094300
[exp]
113 / 3e-30 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2)
Potri.018G043600
[exp]
69 / 8e-14 AT3G46210 404 / 2e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
Potri.001G347900
[exp]
51 / 4e-07 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
Potri.014G166200
[exp]
44 / 4e-05 AT3G07750 422 / 3e-150 3'-5'-exoribonuclease family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037395
[exp]
424 / 9e-152 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1)
Lus10041318
[exp]
411 / 6e-147 AT4G27490 414 / 4e-148 3'-5'-exoribonuclease family protein (.1)
Lus10005148
[exp]
98 / 5e-24 AT3G61620 376 / 4e-133 3'-5'-exoribonuclease family protein (.1.2)
Lus10003036
[exp]
96 / 3e-23 AT3G61620 370 / 9e-131 3'-5'-exoribonuclease family protein (.1.2)
Lus10009221
[exp]
71 / 2e-14 AT3G46210 387 / 4e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
Lus10000255
[exp]
67 / 3e-13 AT3G61620 280 / 4e-97 3'-5'-exoribonuclease family protein (.1.2)
Lus10037991
[exp]
64 / 1e-11 AT3G46210 377 / 1e-133 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
Lus10022250
[exp]
49 / 2e-06 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
Lus10008763
[exp]
49 / 2e-06 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
Lus10001173
[exp]
44 / 4e-05 AT3G07750 466 / 6e-168 3'-5'-exoribonuclease family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0329 S5 PF01138 RNase_PH 3' exoribonuclease family, domain 1
CL0329 PF03725 RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence
>Potri.004G212500.3 pacid=42794531 polypeptide=Potri.004G212500.3.p locus=Potri.004G212500 ID=Potri.004G212500.3.v4.1 annot-version=v4.1
ATGGCCTCCAAAGGTGGTGCAGCGCCAAGCACATACACTCCCACTCCCGCTCCCACTCCCACTCCCACCAAAAAAGCCCAACGTCCTCCATTCTTCACTG
ACTCTGACGTCGACTGGACACGTTCCGATGGCCGTGGTTTCCACCAGTGCCGATCTGCCTTTTTCCGGACTGGTGCTGTCAACTCTGCTGCAGGATCTGC
TTATGCTGAGTTTGGAAATACAAAGGTCATTGTTTCTGTGTTTGGGCCCAGAGAGAGTAAGAAAGCAATGATGTATAGTGACAAGGGCAGGCTTAATTGC
AATGTTAGCTATACCACTTTCGCCACCACTGTTCATGGACAGGGATCAGACAACAAAGAGTTTTCCACCATGCTTCATAAGGCATTGGAAGGGGCAGTAA
TGCTGGAAACTTTTCCCAAAACAACTGTCGATGTGTTTGCATTGGTGTTAGAATCTGGTGGCAGTGATCTTCCTGTTGTAATATCTTGTGCAAGCCTTGC
CTTGGCAGATGCTGGGATTATGATGTATGACCTTGTTGCTGGAGTTTCTGTGTCTTGTCTTGGCAGAAACCTCATCATCGATCCAACTTTGGAAGAGGAA
AGTTTTCAAGACGGAAGCCTGATGATCACTTGCATGCCTTCTCATTATGAGATCACGCAGCTTACCATTACAGGGGAATGGTCAACTGCAAATCTGAATG
AGGCAATGCAGCTTTGCTTGGATGCTTGCTCAAAGCTGGCAAAGATATTGAGGTCCTGTTTGAAAGAGGCTGCTTCAGCTTCAAAAGATTAG
AA sequence
>Potri.004G212500.3 pacid=42794531 polypeptide=Potri.004G212500.3.p locus=Potri.004G212500 ID=Potri.004G212500.3.v4.1 annot-version=v4.1
MASKGGAAPSTYTPTPAPTPTPTKKAQRPPFFTDSDVDWTRSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDKGRLNC
NVSYTTFATTVHGQGSDNKEFSTMLHKALEGAVMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPTLEEE
SFQDGSLMITCMPSHYEITQLTITGEWSTANLNEAMQLCLDACSKLAKILRSCLKEAASASKD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27490 3'-5'-exoribonuclease family p... Potri.004G212500
[exp]
0 1
AT4G03210 XTH9, EXGT-A6, ... xyloglucan endotransglucosylas... Potri.019G125000
[exp]
1.73 0.8822 Pt-XTH9.1
AT1G14810 semialdehyde dehydrogenase fam... Potri.010G105000
[exp]
8.94 0.8233
AT1G67420 Zn-dependent exopeptidases sup... Potri.008G175400
[exp]
11.04 0.8716
AT1G14810 semialdehyde dehydrogenase fam... Potri.010G105300
[exp]
12.60 0.8185
AT3G11470 4'-phosphopantetheinyl transfe... Potri.016G078400
[exp]
12.64 0.8599
AT1G21090 Cupredoxin superfamily protein... Potri.002G067600
[exp]
13.41 0.8571
AT2G16250 Leucine-rich repeat protein ki... Potri.014G196600
[exp]
13.96 0.8236
AT1G61667 Protein of unknown function, D... Potri.011G032600
[exp]
15.09 0.8384
AT4G08980 FBW2 F-BOX WITH WD-40 2 (.1.2.3.4.5... Potri.002G099100
[exp]
15.23 0.8302
AT3G59540 Ribosomal L38e protein family ... Potri.010G181200
[exp]
16.52 0.8664 Pt-RPL38.2

Potri.004G212500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.