Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28250 589 / 0 NCRK Protein kinase superfamily protein (.1.2) AT5G38560 248 / 5e-73 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT4G02010 248 / 1e-72 Protein kinase superfamily protein (.1) AT3G24550 245 / 2e-72 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G70460 245 / 7e-72 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT3G58690 236 / 2e-71 Protein kinase superfamily protein (.1) AT5G02800 235 / 2e-71 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G68690 243 / 7e-71 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT4G34440 241 / 8e-71 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT3G07070 233 / 4e-70 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010400 [exp] 1068 / 0 AT2G28250 597 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G204000 [exp] 248 / 3e-76 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.003G032100 [exp] 245 / 2e-75 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 254 / 5e-75 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 246 / 7e-75 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 251 / 1e-73 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 250 / 1e-73 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 248 / 6e-73 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 249 / 7e-73 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021460 [exp] 753 / 0 AT2G28250 590 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016098 [exp] 733 / 0 AT2G28250 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10006985 [exp] 244 / 2e-74 AT1G52540 348 / 8e-119 Protein kinase superfamily protein (.1) Lus10001323 [exp] 244 / 2e-74 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1) Lus10026335 [exp] 244 / 1e-73 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10011490 [exp] 241 / 1e-73 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10042327 [exp] 247 / 5e-73 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10011098 [exp] 246 / 1e-72 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10019988 [exp] 239 / 1e-72 AT1G52540 348 / 2e-118 Protein kinase superfamily protein (.1) Lus10040050 [exp] 238 / 4e-72 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G212600.1 pacid=42796651 polypeptide=Potri.004G212600.1.p locus=Potri.004G212600 ID=Potri.004G212600.1.v4.1 annot-version=v4.1 ATGAAGCTTCAACTGAAAGTTGCGTTTGCTTGTCTCGTTGGCGTAGTCTGGATCCAGCAAGGCTTTTGTGATGAACTTTCCACTAAATCAGGCATCAACA ATTGGACATGTACATGTTCAGCATCATATCAAGGAAATCAGAGCTATACTAAATCTAATTGTTCTACATCCTGTTATTGCAGTCCAGCCGGTCGACAAAG CAGAGGTACTTGGACATGTACATGTTCTACTGATGGGTTACCAAAAGTTGCTGCTGGCAGTCAAGATACTACCTGTTTTACAGCTTGCAACTGTACCTCT GGATCTCTTACTGATGCTCAAGCTACAAGAAAACATATTTCTAGCAAAATAGTTGTGGTCATCCTATTATGTGTCATACTCACAACTCTTGCATTTCTTG CTTCAACAACATGGTATCTCTGCAGAAAGGACAAGTGCCCTATCCAGTCACCAACATTCTTGTCAGACAGAGAAACAAGTTGCAATAGTGCTACTAACTT AATTAGTCATAGGGCATCTTCAGTGTCGGAAACTAAAATCCGTGTTGATTCCCCTATTAATCCTATATCAGGGTGTTTTCGCAAGGCTTCTTTCTTGTGT AGGAGCAAAACAGAGATTATACATGGAACTTTAATCTGTTTTGCATACTCTGAATTGGAACATGCCACCGATAAGTTCTCCCATTCAAATCTTATAGGAC TTGGGGGAAGTAGTTATGTATATCGTGGTCAGCTCAAGGATGGTACAACTGTGGCAGTTAAGCGACTGAAAGCTCAAGGTGGAACTGATGCAGACCTCCT TTTTTCAAGAGAGGTTGAGCTGTTAGCAAAACTCCACCACTGTCATGTTGTGCCTTTGCTTGGCTACTGCTCGGAGTTCCGAGGGAAGCTTTCTGAGAGG TTGCTGGTATTTGAATACATGCCTAATGGTAACCTGAGGGATTGTTTGGATGGAATTATGGGGGAAAACATGAACTGGCAAACTCGTGTTACCATTGCAA TAGGAGCTGCAAGGGGCTTAGAATATCTCCATGAAGCAGCTGCTCCAAGAATTTTGCATAGAGATGTCAAATCAACCAATATCCTTATGGATGAATTATG GAGGGCAAAAATTACTGATCTTGGTATGGCTAAACGTTTAAGAGCTGATGGAGTTCCCAGCAGTTCCAGTTCTCCAGCAAGAATGCAGGGCACATTTGGA TACTTTGCACCAGAGTATGCAATGATTGGAAGAGCCTCTCTTATGTCAGATGTTTTCAGTTTTGGTGTAGTTCTACTTGAAGTTATCACTGGTCGGCAAC CAATCCATAAAACAACCAACAAAGTAGAAGAAAGCCTTGTCTTATGGGCTACCCCTCTTCTCCAGGATAGCAGGCGAGTAATTTCAGAGTTGCCTGACCC ACGCTTGAAAGGGAATTTCCCAGAAGAAGAGTTGCAAATAATGGCTTACCTGGCAAAGGAGTGCCTGCTGATGGATCCTGATTCTCGACCAAGCATGAGT GAGGTTGTACAAATCCTCTCAACTATAGCACCAGAAAAATCCAAAAGGAGAAACATTCCCGTGAGTCTTTTTCAGATGTCTTCAATCCAGAGTGTGACAA CTGATCCATACAAAGAAAAACCTGACAGTCGAGCTGAAGATCCTGTTGATGCAGAGGAAGTACTGAAACGAGACAGGTTGTCAATTCAACAGTCAGCTTT TGATGTAGACCGCAACCTTTTTGTTGGAAGCTACATTGAAGGGGCAGATAATATTTCAACCAAGTATATGGAGAGGTTAATCATCTCGACTTCAAAAGCT CACAGTTGGGGTGCCGCAGATGATGAGGCCGTAGATTTAACTGAGCCTCGGTTAGAATCTTTCTGTGTGGAAAATGTTGAATCTACTTGA
AA sequence Show only first row Show all	>Potri.004G212600.1 pacid=42796651 polypeptide=Potri.004G212600.1.p locus=Potri.004G212600 ID=Potri.004G212600.1.v4.1 annot-version=v4.1 MKLQLKVAFACLVGVVWIQQGFCDELSTKSGINNWTCTCSASYQGNQSYTKSNCSTSCYCSPAGRQSRGTWTCTCSTDGLPKVAAGSQDTTCFTACNCTS GSLTDAQATRKHISSKIVVVILLCVILTTLAFLASTTWYLCRKDKCPIQSPTFLSDRETSCNSATNLISHRASSVSETKIRVDSPINPISGCFRKASFLC RSKTEIIHGTLICFAYSELEHATDKFSHSNLIGLGGSSYVYRGQLKDGTTVAVKRLKAQGGTDADLLFSREVELLAKLHHCHVVPLLGYCSEFRGKLSER LLVFEYMPNGNLRDCLDGIMGENMNWQTRVTIAIGAARGLEYLHEAAAPRILHRDVKSTNILMDELWRAKITDLGMAKRLRADGVPSSSSSPARMQGTFG YFAPEYAMIGRASLMSDVFSFGVVLLEVITGRQPIHKTTNKVEESLVLWATPLLQDSRRVISELPDPRLKGNFPEEELQIMAYLAKECLLMDPDSRPSMS EVVQILSTIAPEKSKRRNIPVSLFQMSSIQSVTTDPYKEKPDSRAEDPVDAEEVLKRDRLSIQQSAFDVDRNLFVGSYIEGADNISTKYMERLIISTSKA HSWGAADDEAVDLTEPRLESFCVENVEST

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28250		NCRK	Protein kinase superfamily pro...		Potri.004G212600 [exp]	0	1
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.005G117500 [exp]	3.46	0.8972	FAH1.3
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.006G228600 [exp]	6.16	0.8707
AT1G51630			O-fucosyltransferase family pr...		Potri.010G250600 [exp]	8.00	0.8208
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Potri.005G134900 [exp]	11.48	0.8390	LBD36.2
AT4G16380			Heavy metal transport/detoxifi...		Potri.016G006700 [exp]	12.36	0.7920
AT1G55550			P-loop containing nucleoside t...		Potri.001G000800 [exp]	14.07	0.7555
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	16.70	0.8425	CAld5H/F5H4,Pt-FAH1.4
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Potri.015G034700 [exp]	20.56	0.8277	Pt-NCPGS.3
AT5G15790			RING/U-box superfamily protein...		Potri.017G100100 [exp]	20.78	0.8250
AT2G32850			Protein kinase superfamily pro...		Potri.001G228100 [exp]	22.36	0.8393

Compare expression of checked genes

Potri.004G212600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.