Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08080 347 / 4e-121 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT1G08065 293 / 1e-99 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT2G28210 282 / 2e-96 ATACA2 alpha carbonic anhydrase 2 (.1) AT4G20990 262 / 1e-87 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT5G04180 231 / 2e-75 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT4G21000 226 / 7e-74 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1) AT3G52720 212 / 6e-68 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) AT5G56330 210 / 3e-66 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010200 [exp] 454 / 2e-163 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G121900 [exp] 306 / 7e-105 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.016G043700 [exp] 280 / 9e-95 AT4G20990 306 / 4e-105 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047400 [exp] 264 / 3e-88 AT4G20990 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047500 [exp] 253 / 9e-84 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.016G079600 [exp] 224 / 8e-73 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.006G212900 [exp] 219 / 9e-71 AT3G52720 261 / 5e-87 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021455 [exp] 381 / 2e-134 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016104 [exp] 371 / 3e-130 AT1G08080 344 / 7e-120 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016105 [exp] 368 / 3e-129 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10021454 [exp] 332 / 4e-115 AT1G08080 300 / 1e-102 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10021456 [exp] 313 / 2e-108 AT1G08080 288 / 4e-99 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042030 [exp] 308 / 1e-104 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10023915 [exp] 276 / 4e-93 AT1G08080 275 / 2e-92 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10014412 [exp] 275 / 2e-92 AT1G08080 277 / 2e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10018034 [exp] 273 / 4e-91 AT4G20990 248 / 1e-81 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10018017 [exp] 238 / 3e-77 AT4G20990 240 / 4e-78 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [poplar] [flax] Carb_anhydrase Eukaryotic-type carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Potri.004G212800.2 pacid=42793984 polypeptide=Potri.004G212800.2.p locus=Potri.004G212800 ID=Potri.004G212800.2.v4.1 annot-version=v4.1 ATGGGAAAGCTAGCAATCCAGCTCCTCTTTTTGATCACTTTCTTCCTCGTTCTTGTTTCGCATATCCTCCCGATAACATCTCAAGAACTTGAGGATGAAA CGGAGTTTGATTACAATCCATATAGTGAGAGGGGACCGGCTCACTGGGGAAGGATTCACCCTGAATGGGTTGCATGTAGCAATGGATCTATGCAGTCTCC TATTGATCTGTTGAACGAAAGAGTTGATATAGTCTCCTATTTGGGGAGACTCAATAGAAGTTACAAGCCTGGCAATGCCACTCTTAGGAATAGGGGACAT GATATTATGCTGAAATGGGAAAGTGGTGCAGGAACTATTGAAATAAATGGAACTGAATATGTACTCAAACAGTGTCACTGGCATTCACCTTCTGAACATA CAATCGATGGCAAGAGGTTTGCTTTAGAGGCGCACATGGTTCATGAGAGCCTCGATGGAAAGGTTGCTGTTGTTGGGATTCTGTACAAGATAGGAAGACC AGACTCTTTCCTGTCATCTTTGACAGAACAATTAGAATCCGTTGCCGGCACAAATGAACGAGATACCGTGGTTGGCGTAGTCGATCCAAGGAACATTGAG ATAGGCAGCAGAAAGTACTATAGATACTTGGGCTCCCTCACGACTCCTCCTTGCACTGAAAATGTTCTGTGGACCATTGTGAAAAAGGTGAGGACTGCCA CAAGAGAACAAGTCAGGTTGCTTCGTGTAGCTGTTCATGATGACTCGGACACAAATGCAAGACCTCTACAACCACTAAATGGTCGATCGGTGAAACTTTT TGTACCAGAAGACAAACATGACTGA
AA sequence Show only first row Show all	>Potri.004G212800.2 pacid=42793984 polypeptide=Potri.004G212800.2.p locus=Potri.004G212800 ID=Potri.004G212800.2.v4.1 annot-version=v4.1 MGKLAIQLLFLITFFLVLVSHILPITSQELEDETEFDYNPYSERGPAHWGRIHPEWVACSNGSMQSPIDLLNERVDIVSYLGRLNRSYKPGNATLRNRGH DIMLKWESGAGTIEINGTEYVLKQCHWHSPSEHTIDGKRFALEAHMVHESLDGKVAVVGILYKIGRPDSFLSSLTEQLESVAGTNERDTVVGVVDPRNIE IGSRKYYRYLGSLTTPPCTENVLWTIVKKVRTATREQVRLLRVAVHDDSDTNARPLQPLNGRSVKLFVPEDKHD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Potri.004G212800 [exp]	0	1
AT1G17285			unknown protein		Potri.003G073050 [exp]	41.67	0.7390
					Potri.017G022262 [exp]	46.08	0.7358
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Potri.016G055300 [exp]	57.46	0.6588
AT3G24600			Late embryogenesis abundant pr...		Potri.006G160100 [exp]	67.88	0.6819
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.001G362200 [exp]	84.82	0.6571
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Potri.002G055300 [exp]	88.38	0.7047
AT1G30760			FAD-binding Berberine family p...		Potri.011G161300 [exp]	205.41	0.6448
AT5G43150			unknown protein		Potri.002G119700 [exp]	255.30	0.6741
AT3G13130			unknown protein		Potri.016G007400 [exp]	255.47	0.6464
AT1G61250		SC3	secretory carrier 3 (.1.2)		Potri.004G036700 [exp]	261.71	0.6663

Compare expression of checked genes

Potri.004G212800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.