Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60760 851 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45090 826 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G009200 [exp] 1174 / 0 AT5G60760 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G125700 [exp] 45 / 0.0001 AT5G61450 543 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G108000 [exp] 45 / 0.0003 AT5G61450 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021447 [exp] 397 / 9e-133 AT5G60760 422 / 2e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016116 [exp] 395 / 5e-132 AT5G60760 424 / 3e-144 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016117 [exp] 308 / 5e-99 AT5G60760 268 / 2e-84 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021446 [exp] 240 / 1e-73 AT3G45090 229 / 8e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10031163 [exp] 44 / 0.0006 AT5G61450 573 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031740 [exp] 44 / 0.0007 AT5G61450 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13207 [poplar] [flax] AAA_17 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.004G213500.4 pacid=42795649 polypeptide=Potri.004G213500.4.p locus=Potri.004G213500 ID=Potri.004G213500.4.v4.1 annot-version=v4.1 ATGACGACGATGGAGGTTGGAAAAGTGCTGTACATAGTGGTGGTGGATGAGGAGGAAAAAAGAGATAAAGGGAAAGGGAAAGGGAAAGGGAAAGACTCTT TTAGATATACGCGTCCGGTTTTGCAGAGTACTCTGCAACTCATGGGATGTAAAGCACGTCATGCTTTTAAGATTAGCCAAAGGGTTTTTGAGCTCATGAG AAGCGTTTCACATTCGAAAGAAATTGAGATAACAGGAGTGGATGCTTCAAATGGAAATAACGAAAAGGAAGATGGTTTGTCCAGTGGAGTTTTCTTGGGT AAAACAGAGGTTGGTAATAGTTTGGTTTCCGAGGAAGACAGATACAAGAGCATACCATTTGAATTGTACAAAAGGCGAACCACTGTAGTCGTTAGAAGAG AGGCTTTCTTGAATTTTGTTTGTGATGCTCTGACCGAGTACAAGTATGTGGGGCCTAACCAGAGGGAAGACTTGGTTTTGGCTTGCAGAATCCGTGAACG GAAGGAATCCGTAACAGTGCTGTTGTGTGGTACTAGTGGCTGTGGAAAATCTACTTTGTCTGCATTGCTGGGTAGCAGGTTAGGAGTTACAACAGTGATA TCTACGGATTCTATTAGACACATGATGAGGAGTTTTGTAGATGAGAAGCAAAATCCTCTACTTTGGGCCTCGACATACCATGCTGGGGAGTTTTTAGATC CTGTGGCTGTTGCAGAAGCAAAGGCTAAAAGAAAGGCAAAGAAATTGGCAGGCACTGGAACTTTGCATTCAAAGGATGAAGTATCTGATGGCTTTACAAC TGGGAAATCTGGTAGCGGAGCACCAAAGGTGAGTTCTGGTGCTACTGAGGTTATTAGTCCAAAACAAATGGCAGTTGAAGGTTTCAAGGCACAAAGTGAG ATGGTGATTGACAGTCTTGATCGTCTCATTACTGCATGGGAAGAGAGGAAAGAATCAGTAGTGGTCGAGGGTGTTCATTTGAGCCTTAATTTTGTGATGG GGCTTATGAAGAAACACCCTTCAATTATACCATTCATGATATACATTACAAATGAGGACAAACACTTGGAGCGATTTGCAGTTCGTGCAAAGTACATGAC ATTGGACCCAGCTAAAAACAAATATGTAAAATACATTCGGAACATCAGAACAATCCAAGATTATCTTTGCAAACGCGCTGACAAACATCTTGTCCCCAAA ATCAACAACACAAATGTCGATAAGAGTGTGGCAGCTATTCATGCAACAGTCTTCAGCTGCCTTCGAAGGTGGGATGCAGGAGAACAGCTTTATGATCCTA CCACAAACACTGTTGCTCTTGTTGATGAGGAGTACAGGAACCAGTGTGCTGCAAATTCATTGAGCTCCAAGGGGATGTTTCAGCTTATTCAGAGAAAAGG TTCTTCAAGGCATTTGATGGCTCTTCTTAATACTGATGGGTCTGTTGCAAAGGCTTGGCCTGTTGATTCAGTAGATGGTAATGGGAAGCTTGGAACAGGC CATGGGACTGACAGTGGAATAGGGACTCCAATGTATGGACCATTGCAGATAGGCAAGGCTGAACCAGTTAATCTTCAGTTTGGTAACTTTGGAATCAGTG CTTGGCCTAGTGATGGTGGCACAAGTCATGCTGGAAGTGTTGACGAGTCCAGGGCTGATGGGACTGATACAGGGAGCAGATATTACTCCTCTTGTTGCAG CTCGCCAAGGAAGCCTGATGGGGCTGCCAAGGAGCTGAAGGAGGAGCATTCAGTGAATGGCAGTGATGAAGAAGTTGACGATCCACCTGAGGTGGACAGT GATGAGGATCTTAGTGATGATGATGACAAGCATGATCATGAAGAGATTGGCTCAGTTGATGAGGAATACACAAAATCAGATGAAGAATATGATGATCTGG CAATGCAGGATGTGCAGGAGAATGGTTATTGGTCAGACGATGATGAAGAGCCTAAAGATAGGCTGCCCCCTATTTCTGGGGGTAATGTAAGCCCCAACAA AATAGACAAGTACAGGCAGAATTTAGAGCGCTTCCTTGGAACTAGAAGTGAGCAGTTGGCTGAACCACTATGCTCCTACTCTTCTCTGCTTGTGGAGCAA GGTGAGAGGAGAATGTTGAGTTCAGGCAGTCTCAAAATAAGAAAACGTTCACTCAGCATTCCTGCCATCAGAAAGCATGGGTCAGTAATTAGTGATCCCA TTCTCTCCGGAGCACCCCAGAGTAATACACAGGCAGAGTACGTTCTCCCCCTTCGTTTGTGTTCACAGCCATGCCAGCACAGTACACAGCAACCGGGTCT TGCGTCTGCATGGAACCAGACCTTAGAACATCGCCATCGTTGA
AA sequence Show only first row Show all	>Potri.004G213500.4 pacid=42795649 polypeptide=Potri.004G213500.4.p locus=Potri.004G213500 ID=Potri.004G213500.4.v4.1 annot-version=v4.1 MTTMEVGKVLYIVVVDEEEKRDKGKGKGKGKDSFRYTRPVLQSTLQLMGCKARHAFKISQRVFELMRSVSHSKEIEITGVDASNGNNEKEDGLSSGVFLG KTEVGNSLVSEEDRYKSIPFELYKRRTTVVVRREAFLNFVCDALTEYKYVGPNQREDLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGVTTVI STDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPVAVAEAKAKRKAKKLAGTGTLHSKDEVSDGFTTGKSGSGAPKVSSGATEVISPKQMAVEGFKAQSE MVIDSLDRLITAWEERKESVVVEGVHLSLNFVMGLMKKHPSIIPFMIYITNEDKHLERFAVRAKYMTLDPAKNKYVKYIRNIRTIQDYLCKRADKHLVPK INNTNVDKSVAAIHATVFSCLRRWDAGEQLYDPTTNTVALVDEEYRNQCAANSLSSKGMFQLIQRKGSSRHLMALLNTDGSVAKAWPVDSVDGNGKLGTG HGTDSGIGTPMYGPLQIGKAEPVNLQFGNFGISAWPSDGGTSHAGSVDESRADGTDTGSRYYSSCCSSPRKPDGAAKELKEEHSVNGSDEEVDDPPEVDS DEDLSDDDDKHDHEEIGSVDEEYTKSDEEYDDLAMQDVQENGYWSDDDEEPKDRLPPISGGNVSPNKIDKYRQNLERFLGTRSEQLAEPLCSYSSLLVEQ GERRMLSSGSLKIRKRSLSIPAIRKHGSVISDPILSGAPQSNTQAEYVLPLRLCSQPCQHSTQQPGLASAWNQTLEHRHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60760			P-loop containing nucleoside t...		Potri.004G213500 [exp]	0	1
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187300 [exp]	4.24	0.6497
AT3G13600			calmodulin-binding family prot...		Potri.001G005600 [exp]	9.79	0.6310
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.009G023600 [exp]	10.19	0.7050
AT3G07320			O-Glycosyl hydrolases family 1...		Potri.002G247900 [exp]	16.97	0.7115	SGGN1.2
AT1G54610			Protein kinase superfamily pro...		Potri.013G032200 [exp]	18.57	0.6402
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G010101 [exp]	22.93	0.7310
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Potri.006G140300 [exp]	24.55	0.6021
AT4G35220			Cyclase family protein (.1)		Potri.009G097300 [exp]	28.77	0.6270
AT3G21620			ERD (early-responsive to dehyd...		Potri.014G156100 [exp]	29.08	0.6146
AT1G80610			unknown protein		Potri.001G313900 [exp]	30.29	0.6081

Compare expression of checked genes

Potri.004G213500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.