Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08090 104 / 4e-28 LIN1, ACH1, NRT2;1AT, ATNRT2:1 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) AT5G60770 99 / 3e-26 ATNRT2.4 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) AT5G60780 86 / 2e-21 ATNRT2.3 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.3, nitrate transporter 2.3 (.1) AT3G45060 84 / 7e-21 ATNRT2.6 ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, high affinity nitrate transporter 2.6 (.1) AT1G08100 82 / 3e-20 NRT2;2AT, ACH2, ATNRT2.2 nitrate transporter 2.2 (.1) AT1G12940 81 / 1e-19 ATNRT2.5 nitrate transporter2.5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G008600 [exp] 130 / 2e-37 AT1G08090 832 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.009G008500 [exp] 127 / 1e-36 AT1G08090 830 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.012G087700 [exp] 91 / 4e-23 AT1G12940 640 / 0.0 nitrate transporter2.5 (.1) Potri.T124608 [exp] 89 / 1e-22 AT1G12940 688 / 0.0 nitrate transporter2.5 (.1) Potri.015G081300 [exp] 87 / 4e-22 AT1G12940 698 / 0.0 nitrate transporter2.5 (.1) Potri.T124708 [exp] 84 / 5e-21 AT1G12940 684 / 0.0 nitrate transporter2.5 (.1) Potri.001G348300 [exp] 54 / 4e-10 AT5G14570 509 / 1e-178 high affinity nitrate transporter 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021444 [exp] 99 / 4e-27 AT5G60770 307 / 1e-101 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10016120 [exp] 96 / 1e-25 AT1G08090 533 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10026527 [exp] 97 / 2e-25 AT5G60770 759 / 0.0 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10016121 [exp] 93 / 5e-24 AT1G08090 583 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10030902 [exp] 91 / 4e-23 AT1G12940 751 / 0.0 nitrate transporter2.5 (.1) Lus10030588 [exp] 87 / 9e-22 AT1G12940 737 / 0.0 nitrate transporter2.5 (.1) Lus10013042 [exp] 77 / 2e-18 AT1G12940 635 / 0.0 nitrate transporter2.5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G213716.1 pacid=42794289 polypeptide=Potri.004G213716.1.p locus=Potri.004G213716 ID=Potri.004G213716.1.v4.1 annot-version=v4.1 ATGGGTGATATGATTTGTAGTTGCACTCTTCCTGTGACTTTGGTTTACTTCCCACAATGGGGTGGCATGTTCTTTCCGGCATCAAAAGACGTAGTGAAAT CGACTGAAAAATCCTATTATGCATCAGAGTGGAATGAGGAGGAGAAGCAGAAGGGCATGCACCAGCAAAGCCTCAAGTTTGCCGAGAACAGCGGGCCGGT CTGA
AA sequence Show only first row Show all	>Potri.004G213716.1 pacid=42794289 polypeptide=Potri.004G213716.1.p locus=Potri.004G213716 ID=Potri.004G213716.1.v4.1 annot-version=v4.1 MGDMICSCTLPVTLVYFPQWGGMFFPASKDVVKSTEKSYYASEWNEEEKQKGMHQQSLKFAENSGPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Potri.004G213716 [exp]	0	1
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Potri.017G002000 [exp]	19.28	0.6966	Pt-TEJ.2
AT4G30110		ATHMA2, HMA2	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G076900 [exp]	43.55	0.6287
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.019G077500 [exp]	57.96	0.5872
AT5G20045			unknown protein		Potri.008G015800 [exp]	63.24	0.5952
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015966 [exp]	75.23	0.5706
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Potri.014G161100 [exp]	109.30	0.5154	Pt-TAFII59.1
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128200 [exp]	117.47	0.5645	Pt-APP.2
AT5G04550			Protein of unknown function (D...		Potri.006G117000 [exp]	125.52	0.5537
					Potri.003G212150 [exp]	141.87	0.5288

Compare expression of checked genes

Potri.004G213716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.