Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28070 1067 / 0 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT1G17840 394 / 2e-127 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21090 376 / 2e-120 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 360 / 2e-114 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 336 / 4e-105 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT2G37360 160 / 5e-41 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT1G71960 153 / 1e-38 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT3G52310 152 / 2e-38 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT5G06530 152 / 2e-38 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT2G01320 152 / 2e-38 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G008200 [exp] 1230 / 0 AT2G28070 1018 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Potri.018G152600 [exp] 406 / 7e-132 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G155300 [exp] 405 / 2e-131 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G312300 [exp] 401 / 4e-130 AT1G17840 624 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G311300 [exp] 399 / 2e-129 AT1G17840 617 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 389 / 6e-125 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G255800 [exp] 387 / 1e-124 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.005G073050 [exp] 386 / 8e-124 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051000 [exp] 376 / 1e-120 AT1G17840 596 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037384 [exp] 1064 / 0 AT2G28070 1084 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Lus10021440 [exp] 1026 / 0 AT2G28070 1068 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Lus10016125 [exp] 986 / 0 AT2G28070 1035 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Lus10041333 [exp] 962 / 0 AT2G28070 1007 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Lus10023154 [exp] 382 / 2e-122 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10040644 [exp] 371 / 2e-118 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10009961 [exp] 344 / 2e-108 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 341 / 1e-106 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 339 / 4e-106 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 328 / 1e-102 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.004G214000.1 pacid=42793863 polypeptide=Potri.004G214000.1.p locus=Potri.004G214000 ID=Potri.004G214000.1.v4.1 annot-version=v4.1 ATGGAAGAGATACAATCTCAATCGGATAATTACAGATCTTCTTCGTCTTCAGCAAGTAGTCCTGCAAGTAGGGTGCCATCAAGTAACTTCTTCTACTTGC GGAAGCCTGGTTCAGTTAGACAACCTATCTCATTTGAGGATTCACCTGAGTGGGAGGATACCGATATTGACGTTAGGGTGGAGGAAGGAGGTGACTCTAT CAATGTTGCTATTACACCAGCATCCCCATCTTTGTCAAAGCTTAATAGTGGGTCATTGCCATCCCCACCATTACCAGAGCGTGCAGTTGTTGCAAGAAAA ATTGCAGGGGCTTCTGTTGTTTGGAAAGACTTGACTGTTACAATCAAAGGGAAAAGGAAGTACTCAGACAAAGTTGTCAAGAGCTCAAGTGGTTATGCAT TGCCTGGGACGATGACAGTCATCATGGGTCCTGCAAAATCAGGGAAATCCACGTTGCTAAGGGCTATTGCAGGGAGGTTGCATCATTCAGCTAGAATGTA TGGTGAGATTTTTGTCAATGGTGCAAAATCACGCATGCGTTATGGCACATATGGTTTTGTTGAGAGGGAAACTACTCTGATAGGATCTCTCACTGTCAGA GAATACTTGTACTACTCCGCACTGCTTCAACTTCCTGGCTTCTTCTGCCAGAAAAAGAGTGTGGTAGAGGATGCCATCCATGCCATGTCTTTGAGTGATT ATGCAAACAAACTGATTGGAGGACATTGTTATTTTAAGGGCCTTCCAAGTGGCGAGCGAAGGCGTATAAGCATTGCCCGGGAGCTTGTGATGAGGCCACA CGTATTATTTATAGATGAACCTCTCTATCATCTTGACAGTGTCTCTACCCTTCTGATGATGGTTACATTAAAGAAACTTGCTAGCACTGGGTGCACTCTA ATCTTTACCATTTACCAGAGCAGCACAGAAGTGTTTGGTCTCTTTGATCGGATCTGCCTGCTTTCAAATGGAAATACCTTATTTTTTGGAGAAACATTGG CCTGCTTGCAACACTTCTCGAATGCTGGATTTCCTTGCCCAATTATGCAAAGTCCTTCTGATCACTTCTTACGTGCAATAAACACGGATTTTGACAGGAT CATTGCAATGTGCAAAAATTGGCAGGATGACCATGGAGATTTTTCATCAGTGAACATGGACACCGCTGTTGCCATACGTACCCTAGAAGCAACCTATAAA TCATCAGCTGATGCTGCTGCAGTTGAAACTATGATATTGAAACTCACTGAAAGGGAAGGTCCACTTCTTAAAAGCAAGGGAAAAGCTGGCATTGCTACAA GGGTTGCTGTTTTGACTTGGAGATCTTTGCTAGTTATGTCAAGGGAATGGAAATACTACTGGCTTCGCCTTATTCTCTATATGCTCCTTTCTCTCTGTAT TGGTACAGTATTCTCAGGCTTGAGGCATTCTTTGTCTTCAGTTGTGACAAGGGTTGCAGCTATATTTGTATTTGTCTCATTTACTTCACTTCTAAGCATA GCGGGTGTACCTGCGCTGTTGAAGGAAATTAAGATATTTGCATGTGAAGAATCAAATAGGCATTCAGGAGCACTTGTCTTTTTACTTGGGCAACTTATAT CCAGCATACCATTCCTCTTTCTCATCTCCATTTCATCAAGTCTTGTCTTCTATTTCCTCGTAGGCTTGCAAGACGGATTTAGCTTGTTGATGTACTTTGT TTTGAATTTCTTCGTGTGCCTCTTGGTAAATGAAGGACTAATGCTGCTTATCACTTCCCTTTGGCAACATGTTTTCTGGAGTGTATTAACAATGGTGTTC ATACATGTTGTAATGATGCTTTCTGCGGGGTATTTTAGAATTCGAAGTGCCTTGCCAGGACCAGTGTGGACATATCCAGTATCCTATATTGCTTTTCACA CTTACTCTATTCAGGGGCTTTTGGAGAACGAGTACCTGAGAACTTCGTTTGCTGTCGGGCAAGTAAGGACCATTTCAGGATTGCAGGCACTCCGTAGTGC ATATGACATCTCTCCTGATCGTAATTCCAAATGGGAGAATTTGTTGGTGTTGTTTCTCATGGCAATTGGCTATCGCATTCTTGTGTTTGTTGTACTGCAT TTTTGTGTAGGGAAACATGTATCCATACTAAAGTGTTGCCGGTGTAATCGGGATACAGACAATCCTAGATGA
AA sequence Show only first row Show all	>Potri.004G214000.1 pacid=42793863 polypeptide=Potri.004G214000.1.p locus=Potri.004G214000 ID=Potri.004G214000.1.v4.1 annot-version=v4.1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSVRQPISFEDSPEWEDTDIDVRVEEGGDSINVAITPASPSLSKLNSGSLPSPPLPERAVVARK IAGASVVWKDLTVTIKGKRKYSDKVVKSSSGYALPGTMTVIMGPAKSGKSTLLRAIAGRLHHSARMYGEIFVNGAKSRMRYGTYGFVERETTLIGSLTVR EYLYYSALLQLPGFFCQKKSVVEDAIHAMSLSDYANKLIGGHCYFKGLPSGERRRISIARELVMRPHVLFIDEPLYHLDSVSTLLMMVTLKKLASTGCTL IFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQDDHGDFSSVNMDTAVAIRTLEATYK SSADAAAVETMILKLTEREGPLLKSKGKAGIATRVAVLTWRSLLVMSREWKYYWLRLILYMLLSLCIGTVFSGLRHSLSSVVTRVAAIFVFVSFTSLLSI AGVPALLKEIKIFACEESNRHSGALVFLLGQLISSIPFLFLISISSSLVFYFLVGLQDGFSLLMYFVLNFFVCLLVNEGLMLLITSLWQHVFWSVLTMVF IHVVMMLSAGYFRIRSALPGPVWTYPVSYIAFHTYSIQGLLENEYLRTSFAVGQVRTISGLQALRSAYDISPDRNSKWENLLVLFLMAIGYRILVFVVLH FCVGKHVSILKCCRCNRDTDNPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Potri.004G214000 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.001G444500 [exp]	1.41	0.7738
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.010G154300 [exp]	1.73	0.7834
AT3G05675			BTB/POZ domain-containing prot...		Potri.006G202900 [exp]	2.44	0.7671
AT1G13920			Remorin family protein (.1)		Potri.008G093300 [exp]	5.00	0.7484
AT3G14250			RING/U-box superfamily protein...		Potri.001G037200 [exp]	5.47	0.7428
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.005G089800 [exp]	6.24	0.7114
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.017G000100 [exp]	9.32	0.6817
AT3G13890	MYB	ATMYB26, MS35	MALE STERILE 35, myb domain pr...		Potri.001G197000 [exp]	10.00	0.6953
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.002G205400 [exp]	11.83	0.7570
AT4G06599			ubiquitin family protein (.1)		Potri.004G219300 [exp]	14.07	0.7190

Compare expression of checked genes

Potri.004G214000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.