Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28080 545 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 531 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 226 / 2e-68 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT2G30140 219 / 4e-66 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G22340 218 / 4e-65 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22380 214 / 1e-63 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22360 211 / 2e-62 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT2G30150 207 / 1e-61 UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 202 / 3e-59 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT2G43820 201 / 4e-59 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G008100 [exp] 750 / 0 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G281900 [exp] 228 / 3e-69 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.015G071900 [exp] 222 / 6e-67 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.001G281800 [exp] 221 / 2e-66 AT2G30150 467 / 5e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G077200 [exp] 212 / 2e-63 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G023600 [exp] 211 / 1e-62 AT1G22380 526 / 0.0 UDP-glucosyl transferase 85A3 (.1) Potri.009G095200 [exp] 209 / 6e-62 AT2G23260 413 / 5e-141 UDP-glucosyl transferase 84B1 (.1) Potri.016G022500 [exp] 209 / 6e-62 AT1G22340 535 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.002G236400 [exp] 209 / 7e-62 AT1G05560 442 / 1e-152 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016128 [exp] 572 / 0 AT2G36970 558 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016126 [exp] 563 / 0 AT2G28080 551 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021438 [exp] 549 / 0 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021437 [exp] 543 / 0 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016127 [exp] 492 / 3e-173 AT2G36970 426 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10017542 [exp] 219 / 3e-65 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024583 [exp] 216 / 3e-64 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 215 / 7e-64 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10042260 [exp] 215 / 1e-63 AT2G30140 410 / 3e-139 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10010665 [exp] 213 / 2e-63 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.004G214100.3 pacid=42795211 polypeptide=Potri.004G214100.3.p locus=Potri.004G214100 ID=Potri.004G214100.3.v4.1 annot-version=v4.1 ATGTCATCTTCATACCCTTTCCTCTTCAAGGCCATGTCATCCCAGCAGTTCACCTTGCCATCAAGCTGGCATCTCAAGGCTTCACCATCACCTTCATCAA CACCCAGGCCATCCATCACCAAAACCTCCAATGCTCAGCCCAGTAGTGAACCAGACATCTTCGCCAAGGTCCGAGAATCAGGCCTTGATATTCGGTATAC AACTGTCTCCGATGGGCTTCCTATTGGGTTCGACCGCTCGTTGAACTTTGACCAATTCACGGCAGCCCTATTGCATGTGTTCTCGGCCCATGTGGATGAG GTGGTGGGTCAGATTGTAAAGTCTGATGACAGTATTCGATGCTTGATTGCCGATACATTTTTTGTATGGCCATCAAAGATTGCAAAGAAATTTGGTTTGC TATATGTTTCCTTTTGGACAGAACCGGCTTTGGTGTTTTCCTTGTATTATCATATGGATCTTCTAATGATAAATGGTCACTTTGCTTGTCAAGATTGCCG CGAGGACACCATAGATTACATACCAGGAGTTAAGGCCATAGAACCGAAGGACATGTTATCATATCTTCAAGAGACAGATACAACATCCATTAGCCATCAG CTTATTTTCAAGGCCTTCAACGACGCTAGAAATGCAGATTTTCTTTTATGCAACACTGTGCAAGAACTTGAGGTCGAGACTTTGTCAGCCTTACAAGCCA AGATGCCCTGCTATGCAATTGGACCCATTTTTCCTAATGGCTTCACCAAGAGCTTCGTGGCCACCAGCCTGTGGTCCGAGTCCGATTGCACCCAGTGGCT TGACAAAAAGCCTCATGGCTCAGTCTTGTATGTTTCATTTGGTAGCTTCGCACATGTTGCAAAAAGGGACCTCGTAGAGATTGCAAAAGGGCTTTCCCTT AGCAAAGTGAGTTTTGTTTGGGTGCTTCGGCCTGATATTGTGAGCTCCGATGACGCTGATCCCCTGCCTGGTGGGTTTGAGGAAGAGGTTGCGGACCGTG CAATGATCATACCTTGGTGCAGTCAAAGAGCAGTGTTGGCCCACCCAGCGATCGGAGGGTTCTTAACACATTGTGGATGGAACTCTGTACTAGAAAGTAT ATGGTGCCAGGTTCCACTACTGAGTCTCCCTTTGCAGACAGATCAATTCACAAATAGGAAATTAGTGGTTGATGACTGGAAGATAGGGTTTAATTTGAGT GATGGAAAGTTTGTCACTAAAGAGGAAGTTTCTTACAATGTCAAACGGTTGATGAGTGGAAAATCAGAGGACGGATTCAGGAACACAATCAAGGAGATGA AGAAAACATTAGAAAATGCATTGTCATGCAATGGGTCGTCAGAGATAAATATGGCTCGGTTCGTCAAGGACCTAAGGACCAAGATCAGTGAAAAGATGAA GCCAGTAGACAGATCTGCATGCACCGGCAGCCAAAACCATTAG
AA sequence Show only first row Show all	>Potri.004G214100.3 pacid=42795211 polypeptide=Potri.004G214100.3.p locus=Potri.004G214100 ID=Potri.004G214100.3.v4.1 annot-version=v4.1 MSSSYPFLFKAMSSQQFTLPSSWHLKASPSPSSTPRPSITKTSNAQPSSEPDIFAKVRESGLDIRYTTVSDGLPIGFDRSLNFDQFTAALLHVFSAHVDE VVGQIVKSDDSIRCLIADTFFVWPSKIAKKFGLLYVSFWTEPALVFSLYYHMDLLMINGHFACQDCREDTIDYIPGVKAIEPKDMLSYLQETDTTSISHQ LIFKAFNDARNADFLLCNTVQELEVETLSALQAKMPCYAIGPIFPNGFTKSFVATSLWSESDCTQWLDKKPHGSVLYVSFGSFAHVAKRDLVEIAKGLSL SKVSFVWVLRPDIVSSDDADPLPGGFEEEVADRAMIIPWCSQRAVLAHPAIGGFLTHCGWNSVLESIWCQVPLLSLPLQTDQFTNRKLVVDDWKIGFNLS DGKFVTKEEVSYNVKRLMSGKSEDGFRNTIKEMKKTLENALSCNGSSEINMARFVKDLRTKISEKMKPVDRSACTGSQNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28080			UDP-Glycosyltransferase superf...		Potri.004G214100 [exp]	0	1
AT2G48020			Major facilitator superfamily ...		Potri.014G136600 [exp]	5.00	0.8511
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G116000 [exp]	6.63	0.8489
AT2G44050		COS1	coronatine insensitive1 suppre...		Potri.007G146000 [exp]	9.16	0.8466
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.018G104700 [exp]	22.04	0.7544
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028450 [exp]	23.49	0.8066
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028150 [exp]	26.26	0.8083
AT1G76560		CP12-3	CP12 domain-containing protein...		Potri.002G002700 [exp]	28.72	0.7259
AT1G52190			Major facilitator superfamily ...		Potri.018G041800 [exp]	29.51	0.7311
AT5G10610		CYP81K1	"cytochrome P450, family 81, s...		Potri.017G028100 [exp]	31.08	0.8078
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028200 [exp]	32.03	0.8031	CYP81R2v2,IFS1.55

Compare expression of checked genes

Potri.004G214100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.