Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60800 142 / 7e-40 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G28090 110 / 3e-28 Heavy metal transport/detoxification superfamily protein (.1) AT5G03380 106 / 1e-25 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G36950 98 / 8e-23 Heavy metal transport/detoxification superfamily protein (.1) AT3G02960 90 / 1e-20 Heavy metal transport/detoxification superfamily protein (.1) AT5G50740 76 / 1e-15 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT5G24580 64 / 2e-11 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT1G29000 64 / 2e-11 Heavy metal transport/detoxification superfamily protein (.1) AT5G63530 57 / 4e-09 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) AT3G06130 51 / 5e-07 Heavy metal transport/detoxification superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G007600 [exp] 234 / 8e-75 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.016G093100 [exp] 110 / 9e-28 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G124800 [exp] 107 / 2e-26 AT2G36950 135 / 2e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.016G006600 [exp] 83 / 3e-18 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.006G006100 [exp] 74 / 4e-15 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.016G017600 [exp] 73 / 4e-15 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.012G101400 [exp] 73 / 3e-14 AT5G63530 204 / 2e-63 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) Potri.012G007300 [exp] 72 / 3e-14 AT5G24580 251 / 5e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.015G099500 [exp] 71 / 2e-13 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016133 [exp] 177 / 3e-52 AT5G60800 175 / 3e-52 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10021432 [exp] 168 / 1e-49 AT5G60800 158 / 1e-46 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014421 [exp] 120 / 3e-30 AT5G03380 193 / 5e-57 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10021516 [exp] 117 / 1e-29 AT5G03380 202 / 2e-61 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10022617 [exp] 114 / 2e-28 AT2G36950 178 / 2e-51 Heavy metal transport/detoxification superfamily protein (.1) Lus10023924 [exp] 76 / 4e-15 AT5G03380 180 / 6e-54 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039074 [exp] 73 / 1e-14 AT5G50740 182 / 8e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10038785 [exp] 73 / 1e-14 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10032923 [exp] 72 / 5e-14 AT5G24580 313 / 1e-106 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10032245 [exp] 64 / 1e-12 AT2G36950 79 / 2e-18 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.004G214700.1 pacid=42796704 polypeptide=Potri.004G214700.1.p locus=Potri.004G214700 ID=Potri.004G214700.1.v4.1 annot-version=v4.1 ATGGCTAAGAAGAAAAACAACAACAACGACAACAACAACAGCAGCAACGTAGTAGAGAAGAAAGAGGGAGGAGAAAACAAGAAAGGTGGTGATGGGGGAG GAAAAAAACAAGAAAATAAGCCAATCCCGGTGGTTTTGAAAGTCGAAATGCATTGCGAAGGCTGTGTTTCTACGATCCTCAAACATGCTCGCGCTTTTGA AGGCGTGGAGTCAGTGGAAGCAGAGGCAAGTTCAAACAAGCTTACTGTTATAGGGAAGGTGGATCCCTTGAAAATCCGAGACTATCTCCACTATAAAACC AAGAAGAAAGTCGAACTCATCTCTCCACAACCCCAAAAACAAGACACAACCACCGCCAACAAGAACAACAAAGAGGACAAGAAGTCCAACGACAAAAAAC CGGACTCTGATGCCAAGCCAAAAGAGGCTCCGGTGATAACGGCGGTACTCAAGCTGGGACTTCACTGCCAGGGTTGCATCGAGAAGATTGAGAAGATAGT CTCCAAAACCAAGGGTGTGCATGAGACAGTAATTGACAGGCAGAAGGAATTGGTGACGGTCAAAGGTACAATGGATGTGAAGGCTTTGACCGAGACCTTG AAGTCCAAGCTTAAGAGGCCAGTGGACATTGTGCCACCTAAGAAGGAGAAGGAAGGTGGCAAGGATGGGGAAAACGTCGCGGGAGGCGGTGGTGGGAAGA AGAAAGGTGGCGGTGGAAATGGTGGGCAAGATGGTGGTGGTGGTGGTGCTGCTGCTGCTGCTCCTGCTCCTGCTGCAAAAATGGAAGAGAATCGGATGGA GTACATGGTGCAACCTGGGTTTGGGTCTGGATATGGGTACGTGGGTCAGCCACTCCATGGAAATGGGTATGTGGTTCAGCCAATCCATGGAAATGGGTAT GTGGGTCACCCTGTTTATGCTCCATATGGACCGGGCTACGGGTATGGGTATGGATATGGGCACGGACCGGTTCAGGGTTACCCGGATCATTTGCGGTTCA ACGATGAGAACCCGAATGCCTGCTCTATAATGTGA
AA sequence Show only first row Show all	>Potri.004G214700.1 pacid=42796704 polypeptide=Potri.004G214700.1.p locus=Potri.004G214700 ID=Potri.004G214700.1.v4.1 annot-version=v4.1 MAKKKNNNNDNNNSSNVVEKKEGGENKKGGDGGGKKQENKPIPVVLKVEMHCEGCVSTILKHARAFEGVESVEAEASSNKLTVIGKVDPLKIRDYLHYKT KKKVELISPQPQKQDTTTANKNNKEDKKSNDKKPDSDAKPKEAPVITAVLKLGLHCQGCIEKIEKIVSKTKGVHETVIDRQKELVTVKGTMDVKALTETL KSKLKRPVDIVPPKKEKEGGKDGENVAGGGGGKKKGGGGNGGQDGGGGGAAAAAPAPAAKMEENRMEYMVQPGFGSGYGYVGQPLHGNGYVVQPIHGNGY VGHPVYAPYGPGYGYGYGYGHGPVQGYPDHLRFNDENPNACSIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60800			Heavy metal transport/detoxifi...		Potri.004G214700 [exp]	0	1
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.017G013700 [exp]	2.00	0.7344	ERF46
AT1G13920			Remorin family protein (.1)		Potri.008G093300 [exp]	2.00	0.7499
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G061500 [exp]	7.07	0.7054
					Potri.012G129400 [exp]	7.48	0.6935
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.010G078400 [exp]	8.48	0.6642
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Potri.011G125300 [exp]	8.94	0.6780
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014318 [exp]	11.61	0.7133
AT2G42040			unknown protein		Potri.016G059400 [exp]	11.66	0.6855
AT1G69050			unknown protein		Potri.010G138700 [exp]	15.19	0.6706
AT1G28280			VQ motif-containing protein (....		Potri.011G053700 [exp]	17.74	0.6020

Compare expression of checked genes

Potri.004G214700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.