Plant FIBer expression Database

Potri.004G215200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29735 81 / 7e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G146800
[exp]
103 / 4e-31 AT4G29735 72 / 2e-18 unknown protein
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05251 Ost5 Oligosaccharyltransferase subunit 5
Representative CDS sequence
>Potri.004G215200.2 pacid=42795843 polypeptide=Potri.004G215200.2.p locus=Potri.004G215200 ID=Potri.004G215200.2.v4.1 annot-version=v4.1
ATGAAGGGTTCAAAGGCAGCAGCAATATCGAGTCCAGTCCCGGTGGCATGGTACCCAACCCTAGCAGTCTTCATGCTGGCCATCGGCCTTATTGTCACTG
CTTCCTTCTTCATTTACGAAGCGACCTCTTCTAGGAGAAATCGCAGTTTGGCAAAGGAGCTTACAACAGGAGCAATTGCCTCCTTATTTCTGGGTTTTGG
GTCCTTGTTCCTGCTACTTGCTTCTGGTGTTTATGTCTAA
AA sequence
>Potri.004G215200.2 pacid=42795843 polypeptide=Potri.004G215200.2.p locus=Potri.004G215200 ID=Potri.004G215200.2.v4.1 annot-version=v4.1
MKGSKAAAISSPVPVAWYPTLAVFMLAIGLIVTASFFIYEATSSRRNRSLAKELTTGAIASLFLGFGSLFLLLASGVYV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G29735 unknown protein Potri.004G215200
[exp]
0 1
AT1G77350 unknown protein Potri.019G066600
[exp]
1.41 0.9354
AT3G50860 Clathrin adaptor complex small... Potri.007G025400
[exp]
4.35 0.8845
AT5G54750 Transport protein particle (TR... Potri.001G418400
[exp]
4.69 0.9187
AT1G45000 AAA-type ATPase family protein... Potri.004G158600
[exp]
6.24 0.8702
AT4G20150 unknown protein Potri.001G074901
[exp]
7.07 0.9063
AT1G32210 ATDAD1 DEFENDER AGAINST APOPTOTIC DEA... Potri.003G096800
[exp]
7.14 0.9139 Pt-DAD1.1
AT1G60660 B5 #5, B5#5, AT... ARABIDOPSIS CYTOCHROME B5-LIKE... Potri.018G087600
[exp]
7.74 0.8967 B5.1
AT5G49540 Rab5-interacting family protei... Potri.008G102200
[exp]
7.87 0.8774
AT3G04780 Protein of unknown function (D... Potri.013G039500
[exp]
9.16 0.9076
AT5G09900 RPN5A, MSA, EMB... REGULATORY PARTICLE NON-ATPASE... Potri.005G087100
[exp]
9.32 0.8777

Potri.004G215200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.