Plant FIBer expression Database

Potri.004G215300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28105 165 / 7e-53 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G057300
[exp]
40 / 0.0002 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016142
[exp]
214 / 8e-72 AT2G28105 168 / 6e-54 unknown protein
Lus10021424
[exp]
205 / 2e-68 AT2G28105 158 / 8e-50 unknown protein
PFAM info
Representative CDS sequence
>Potri.004G215300.1 pacid=42795747 polypeptide=Potri.004G215300.1.p locus=Potri.004G215300 ID=Potri.004G215300.1.v4.1 annot-version=v4.1
ATGGAGGAGTATGAGAAGGCAACAACAGTAATGTGTACAGTGATAGGCATGGACTACGCCAACAGTCTCTCTTACAGAGCCTGCTCACTCTGCGAGAGAA
CTCTTCCTGATACTCTCAATGCCCTTTGCAAATTCTGCCACAACAATACCGCCTCCTCCTCTTCCAAGCGCCTCTTTCGTGTCCTTGTTTCCATAGCCAC
GGATACCAAGGTGCTTAATGTCATGTGCTTTGATAGGGCTGCTAGAGTCTTGTTTGGCTGCTCTGCTGATGACTTCTTTCACTTTTCCAAGCTTCACCCT
TTCGCTGCTTCCAATGCTGCTAAAATTTTGGAAGGAGAGATGTGTAGAATGACTTTGTCCAGACCAAAGAATGGTAATGCACAACACTTGCGAGCTGTCT
CTATTGTACCTTTGAGGTCTGGTTTCAAGCCAGCAATTGAATCATTGAAGGAATTCTATGGGGTAAAACCAGCAACTTCTTGA
AA sequence
>Potri.004G215300.1 pacid=42795747 polypeptide=Potri.004G215300.1.p locus=Potri.004G215300 ID=Potri.004G215300.1.v4.1 annot-version=v4.1
MEEYEKATTVMCTVIGMDYANSLSYRACSLCERTLPDTLNALCKFCHNNTASSSSKRLFRVLVSIATDTKVLNVMCFDRAARVLFGCSADDFFHFSKLHP
FAASNAAKILEGEMCRMTLSRPKNGNAQHLRAVSIVPLRSGFKPAIESLKEFYGVKPATS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G28105 unknown protein Potri.004G215300
[exp]
0 1
AT1G57720 Translation elongation factor ... Potri.019G077000
[exp]
4.79 0.9056
AT3G22110 PAC1 20S proteasome alpha subunit C... Potri.016G015400
[exp]
10.81 0.8979
AT5G03220 Mediator complex, subunit Med7... Potri.016G062800
[exp]
13.19 0.8585
AT2G43360 BIOB, BIO2 BIOTIN AUXOTROPH B, BIOTIN AUX... Potri.017G033300
[exp]
14.07 0.8446 Pt-BIO2.2
AT4G00710 BSK3 BR-signaling kinase 3 (.1) Potri.002G158400
[exp]
16.58 0.8813
AT1G19580 GAMMACA1 ,GAMMA... gamma carbonic anhydrase 1 (.1... Potri.005G229000
[exp]
16.94 0.8847 APFI.2
AT5G39740 OLI7, RPL5B OLIGOCELLULA 7, ribosomal prot... Potri.019G099000
[exp]
18.00 0.8995
AT2G37270 ATRPS5B ribosomal protein 5B (.1.2) Potri.016G063200
[exp]
21.54 0.8977 Pt-RPS5.1
AT2G32060 Ribosomal protein L7Ae/L30e/S1... Potri.002G056200
[exp]
23.55 0.8938 Pt-RPS12.2
AT4G37450 ATAGP18, AGP18 arabinogalactan protein 18 (.... Potri.007G051600
[exp]
23.81 0.8569

Potri.004G215300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.