Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45010 691 / 0 SCPL48 serine carboxypeptidase-like 48 (.1) AT3G10410 665 / 0 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT5G22980 643 / 0 SCPL47 serine carboxypeptidase-like 47 (.1) AT5G22960 214 / 4e-67 alpha/beta-Hydrolases superfamily protein (.1) AT5G23210 182 / 3e-51 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT1G73300 180 / 3e-51 SCPL2 serine carboxypeptidase-like 2 (.1) AT1G15000 179 / 1e-50 SCPL50 serine carboxypeptidase-like 50 (.1) AT1G61130 178 / 5e-50 SCPL32 serine carboxypeptidase-like 32 (.1) AT1G28110 177 / 6e-50 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 177 / 1e-49 SCPL46 serine carboxypeptidase-like 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227700 [exp] 679 / 0 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.008G034800 [exp] 670 / 0 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.009G006701 [exp] 207 / 3e-65 AT3G45010 171 / 7e-52 serine carboxypeptidase-like 48 (.1) Potri.006G036000 [exp] 207 / 7e-61 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.005G060100 [exp] 193 / 7e-56 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.006G036500 [exp] 193 / 1e-55 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 193 / 2e-55 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 189 / 4e-54 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 189 / 4e-54 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037958 [exp] 675 / 0 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041339 [exp] 672 / 0 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10038691 [exp] 655 / 0 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10017466 [exp] 645 / 0 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041338 [exp] 468 / 2e-163 AT3G45010 460 / 3e-160 serine carboxypeptidase-like 48 (.1) Lus10037381 [exp] 464 / 2e-161 AT3G10410 456 / 2e-158 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10037380 [exp] 222 / 2e-70 AT3G45010 216 / 1e-68 serine carboxypeptidase-like 48 (.1) Lus10042287 [exp] 192 / 4e-55 AT1G28110 598 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10026331 [exp] 187 / 2e-53 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10036016 [exp] 185 / 2e-52 AT1G28110 690 / 0.0 serine carboxypeptidase-like 45 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.004G215400.1 pacid=42796063 polypeptide=Potri.004G215400.1.p locus=Potri.004G215400 ID=Potri.004G215400.1.v4.1 annot-version=v4.1 ATGGCATCGACTTATTCTTACATGTTTTTTTCTTTTTTTCTTTTTCTCCTCATCACTTCACAATTCTCATATGCTAGATATCCCAAGGGCCAGCTTGACT TGTCTGCCAGCTTCCTGCCAAGACTACATGCAGAAACGCAGATAAGAGGGCTTAATTTGTTCCCTAAGCATGCCATCAACGTACCTGCCTTTGATGATAA TGAACTGTTAGGCACTTCTTCTCCAAGTATTGTTGAGAAACAATTCCAATTCCATCTTCTTGGTAACCCAGGGCCTTCTGTTCAAGAGTTTGGCCATTAT GCTGGGTACTACCGCCTTTCCCATACTAAAGCTGCAAGGATGTTCTACTACTTCTTCGAATCGCGGACTAACAAGAATGATCCTGTTGTCATATGGTTGA CAGGAGGGCCAGGATGTAGCAGTGAATTGGCATTGTTTTATGAAAATGGTCCTTTCAATATTGCAAACAACCTGTCTCTTTCATGGAATGACTACGGTTG GGACAAGGCATCAAATATTATATTCGTTGACCAGCCTACTGGAACTGGCTTTAGTTATACGACAGAGGAGACTGACATTCGCCACGACGAAACTGGAGTC AGCAATGACTTGTATGACTTCTTGCAGGCATTTTTCAAAGAGCATCCTCAGTTGACGAAAAATGATTTTTACATAACTGGAGAATCTTATGCTGGGCACT ACATTCCAGCATTAGCTTCTCGGGTTCACCAAGGAAACAAAAAGAAAGAAGGAATTCATATAAACCTCAAGGGTTTTGCCATTGGCAATGGTCTAACTCA ACCTGACGTTCAGTATAAAGCATACACTGATTATGCTTTGGACAACAAGTTAATCGAAAAACCTGATTACGATAGCATTAACGAGATGATCCCAGACTGC GAACGAGCAATCAAAGTTTGTGGAACTGATGGTGTATCTACTTGTGAGGATGCATTTGACGTTTGCAACAACATATTTCAGAGCATCTTGCAAGTTGCTG GCAATATAAACTACTATGATATTAGAAAGACATGCGAGGGCAGTCTATGCTACGATTTCTCAAACATGGAGACATTCCTGAACCAGAAAACAGTAAGGGA TGCTCTAGGCGTAGGAGATATTGAATTTGTTTCCTGCAGCAGCGTGGTGTATGATGCCATGACAAGAGACTGGATGAGAAATCTTGCAGTAGGAGTTCCT GCTCTCCTAGAGGATGGTATCAAGGTGCTTATTTATGCTGGAGAGGAGGATTTGATATGCAACTGGCTGGGAAATTCAAGGTGGGTAAATGGCTTGGCAT GGTCTGGCCAGAAAGACTTCGGAGCAGCTCCAACAGTTCCATTCGTTGTTGAAGGCAGAGAAGCAGGACAGCTGAAAAGTCACGGTCCTCTCAGTTTCCT AAAGGTTCACAATGCTGGTCACATGGTTCCAATGGATCAGCCAAAAGCTGCATTACAAATGCTGAAGAGCTGGATGCAAGGAAAGCTTGCCGTGACTGGC ACTAAAGATTGGATTGCTCCCCAGTAA
AA sequence Show only first row Show all	>Potri.004G215400.1 pacid=42796063 polypeptide=Potri.004G215400.1.p locus=Potri.004G215400 ID=Potri.004G215400.1.v4.1 annot-version=v4.1 MASTYSYMFFSFFLFLLITSQFSYARYPKGQLDLSASFLPRLHAETQIRGLNLFPKHAINVPAFDDNELLGTSSPSIVEKQFQFHLLGNPGPSVQEFGHY AGYYRLSHTKAARMFYYFFESRTNKNDPVVIWLTGGPGCSSELALFYENGPFNIANNLSLSWNDYGWDKASNIIFVDQPTGTGFSYTTEETDIRHDETGV SNDLYDFLQAFFKEHPQLTKNDFYITGESYAGHYIPALASRVHQGNKKKEGIHINLKGFAIGNGLTQPDVQYKAYTDYALDNKLIEKPDYDSINEMIPDC ERAIKVCGTDGVSTCEDAFDVCNNIFQSILQVAGNINYYDIRKTCEGSLCYDFSNMETFLNQKTVRDALGVGDIEFVSCSSVVYDAMTRDWMRNLAVGVP ALLEDGIKVLIYAGEEDLICNWLGNSRWVNGLAWSGQKDFGAAPTVPFVVEGREAGQLKSHGPLSFLKVHNAGHMVPMDQPKAALQMLKSWMQGKLAVTG TKDWIAPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Potri.004G215400 [exp]	0	1
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Potri.011G044500 [exp]	2.44	0.8483	BFN1.1
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.010G027600 [exp]	2.82	0.8454
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120700 [exp]	3.16	0.7922
AT2G14095			unknown protein		Potri.001G310100 [exp]	7.93	0.7772
AT4G18425			Protein of unknown function (D...		Potri.004G049000 [exp]	8.06	0.7605
AT2G16980			Major facilitator superfamily ...		Potri.002G016200 [exp]	8.12	0.8113
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.007G128800 [exp]	9.16	0.7207
AT3G61490			Pectin lyase-like superfamily ...		Potri.003G131700 [exp]	10.19	0.7997
AT1G30760			FAD-binding Berberine family p...		Potri.001G462800 [exp]	10.95	0.7014
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.010G049700 [exp]	13.49	0.7867

Compare expression of checked genes

Potri.004G215400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.