Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22950 332 / 6e-117 VPS24.1 SNF7 family protein (.1) AT3G45000 258 / 4e-88 VPS24.2 SNF7 family protein (.1.2) AT1G03950 72 / 3e-15 VPS2.3 vacuolar protein sorting-associated protein 2.3 (.1) AT5G44560 64 / 2e-12 VPS2.2 SNF7 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034700 [exp] 301 / 2e-104 AT5G22950 337 / 2e-118 SNF7 family protein (.1) Potri.002G035900 [exp] 72 / 2e-15 AT1G03950 308 / 8e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.005G227000 [exp] 72 / 2e-15 AT1G03950 309 / 3e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.001G442500 [exp] 62 / 1e-11 AT5G44560 328 / 3e-115 SNF7 family protein (.1.2) Potri.011G154700 [exp] 62 / 2e-11 AT5G44560 331 / 1e-116 SNF7 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016143 [exp] 331 / 3e-116 AT5G22950 357 / 2e-126 SNF7 family protein (.1) Lus10021423 [exp] 328 / 3e-115 AT5G22950 354 / 2e-125 SNF7 family protein (.1) Lus10037660 [exp] 56 / 4e-09 AT2G06530 358 / 6e-127 SNF7 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [poplar] [flax] PspA PF03357 [poplar] [flax] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Potri.004G215500.1 pacid=42795144 polypeptide=Potri.004G215500.1.p locus=Potri.004G215500 ID=Potri.004G215500.1.v4.1 annot-version=v4.1 ATGGAGAAAGTAATGAACATAATAAAGCCAAAGCCAAATCCACAGCAACAACTCAGAGATTGGCAGCGCAGGCTACGCCAAGAGTGCCGCAACATCGAGC GTCAAATCCGAGATATACAGAGAGAAGAGAAAACTGTACAAAAAGCAATTAGAGATGCTGCTAAAAGAAATGATATGGTCTCAGCCAAGGCACTTGCCAA GGAAATTGTGATGTCTAGAAGAACAGTAAACCGTCTTTATGAAAATAAGGCACAGATGAATTCAATATCAATGCATCTTGGAGAAAGTGTCGCGATTGCC CGTACAGTGGGCCATTTGTCCAAGAGTGCTGAGGTTATGAAGCTTGTCAATGATCTCATGAAGGCTCCAGATGTGGCTGTTACGATGCAAGAGTTCAGCA AAGAAATGACCAAGGCAGGGGTGATTGAGGAGTTTGTGAACGATGCCCTTGACAGTGCGCTGGATTCGGAGGATATGGAAGAGGAGATTGAAGAAGAAGT TGACAAGGTATTGACTGCTATAGCTGGCGAGACTGCTGCAGAGCTACCAGCAGCAGTCAGGAAGGAGAGAGTGAAGCAATCTGCTCAGATGGAAGAGGAA GAAGCTATAGCTGAGGGTGTTGATGATGAGGGAGAACTTGAAGAAATAAGGGCACGACTTGCCAGCGTTAGATCATAA
AA sequence Show only first row Show all	>Potri.004G215500.1 pacid=42795144 polypeptide=Potri.004G215500.1.p locus=Potri.004G215500 ID=Potri.004G215500.1.v4.1 annot-version=v4.1 MEKVMNIIKPKPNPQQQLRDWQRRLRQECRNIERQIRDIQREEKTVQKAIRDAAKRNDMVSAKALAKEIVMSRRTVNRLYENKAQMNSISMHLGESVAIA RTVGHLSKSAEVMKLVNDLMKAPDVAVTMQEFSKEMTKAGVIEEFVNDALDSALDSEDMEEEIEEEVDKVLTAIAGETAAELPAAVRKERVKQSAQMEEE EAIAEGVDDEGELEEIRARLASVRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22950		VPS24.1	SNF7 family protein (.1)		Potri.004G215500 [exp]	0	1
AT1G54210		ATATG12, APG12,...	AUTOPHAGY 12 A, AUTOPHAGY 12, ...		Potri.001G169700 [exp]	2.00	0.7781
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.009G107600 [exp]	5.29	0.7295	2OGox7
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Potri.014G138800 [exp]	6.24	0.7077	GPX4.1,PtrcGpx4
AT3G53490			unknown protein		Potri.016G081900 [exp]	10.24	0.6627
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.018G069900 [exp]	10.39	0.6946
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.014G060300 [exp]	13.22	0.6933
AT2G10950			BSD domain-containing protein ...		Potri.018G125400 [exp]	16.00	0.6416
					Potri.001G131500 [exp]	18.81	0.6925
AT2G44140			Peptidase family C54 protein (...		Potri.017G000500 [exp]	19.39	0.6260
AT2G20010			Protein of unknown function (D...		Potri.018G085900 [exp]	20.34	0.6675

Compare expression of checked genes

Potri.004G215500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.