Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28120 809 / 0 Major facilitator superfamily protein (.1) AT2G39210 679 / 0 Major facilitator superfamily protein (.1) AT1G74780 325 / 8e-105 Nodulin-like / Major Facilitator Superfamily protein (.1) AT3G01930 324 / 8e-104 Major facilitator superfamily protein (.1.2) AT5G50520 310 / 5e-99 Major facilitator superfamily protein (.1) AT5G50630 310 / 5e-99 Major facilitator superfamily protein (.1) AT5G14120 309 / 5e-98 Major facilitator superfamily protein (.1) AT1G18940 307 / 7e-98 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34350 298 / 1e-94 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34355 296 / 1e-93 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006400 [exp] 972 / 0 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.006G122400 [exp] 659 / 0 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.008G032901 [exp] 655 / 0 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.002G133900 [exp] 603 / 0 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.001G194500 [exp] 427 / 5e-149 AT2G28120 377 / 9e-130 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 327 / 7e-105 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 325 / 3e-104 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.012G098900 [exp] 319 / 1e-101 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.015G067000 [exp] 309 / 2e-98 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037948 [exp] 663 / 0 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1) Lus10038682 [exp] 659 / 0 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1) Lus10014640 [exp] 634 / 0 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 631 / 0 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 631 / 0 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10022614 [exp] 553 / 0 AT2G39210 652 / 0.0 Major facilitator superfamily protein (.1) Lus10021513 [exp] 505 / 3e-175 AT2G39210 587 / 0.0 Major facilitator superfamily protein (.1) Lus10042170 [exp] 327 / 2e-105 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10035203 [exp] 323 / 2e-103 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10032034 [exp] 323 / 3e-103 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06813 [poplar] [flax] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Potri.004G215600.1 pacid=42794903 polypeptide=Potri.004G215600.1.p locus=Potri.004G215600 ID=Potri.004G215600.1.v4.1 annot-version=v4.1 ATGGGTGACCCGTGGGAATTCGCTGTACATGCGATAAATGGGAGGTGGTTCTCTGTTTTTGCCTCTTTTTTAATCATGGCTGGAGCTGGTGCTACATATC TGTTTGGCACCTACTCAAAAGACATAAAAGCCACACTTGGTTATGACCAAACTACTCTCAATCTCTTAGGATTCTTTAAGGATCTGGGTGCCAATGTCGG GGTCTTTTCTGGGCTTCTAGCTGAAGTGACACCAACATGGTTTGTGCTTCTGGTAGGTTCTGCCATGAACTTTGCAGGGTACTTCATGATTTGGCTAGCT GTGACTCAGAAGATAGCCAGGCCAGCTGTTTGGCAGATGTGTTTGTATATTTGTATAGGAGCCAATTCCCAAAATTTTGCAAACACAGGAGCTCTTGTCA CTTGTGTGAAGAATTTCCCAGAAAGTAGAGGGGTGATGTTGGGTCTGTTGAAGGGTTTTGTTGGGTTAAGTGGAGCTATCCTGACACAATTTTACCTAGC CATCTATGGAACTGATTCAAAGTCTCTCATTCTTCTCATTGGGTGGCTCCCAGCTGCTTTATCTGTGATTTTTGTGTATACAGTTCGGGAAAGGAAGCCT GAGAGGCAACCTAATGAGCTCAGGGTTTTTTACCATTTTCTCTACGTGTCAATTGTGCTAGCTTTGTTTCTCATGGCTATGAATATAGTTGAAAAACAGG TTGATTTCTCCAAAGCAGCCTATGCTGGAAGTGCCGCTGTAGTCTGTGCCATGCTTTTTGTACCTCTCATTATTGCCATTAGAGAGGATTGGGTCCAATG GAACCTCAAGAATCAAGATGGAATGAAGCCTGCTACAGAGACAACCGTTGACAGGGCACTAGATATTGCACCAGAAGTGAAGTCTGAAGTCTCAAAAGAT AAAGAGGAGAAGGCTAAAGAATCTTGTTTCGTCAGCATATGTCACAAGCCAGAGAGAGGTGAAGACTACACAATCTTACAAGCACTTTTGAGCATGGATA TGCTAATCTTATTTGCTGCAACATTTTGTGGCCTTGGTGGAAGCTTAACAGCAGTAGACAACTTGGGCCAAATTGGTGAATCCCTAGGATATCCAACTAA AACCATCAAATCCTTCGTTTCACTAGTGAGCATATGGAATTATTTTGGAAGGGTATTTTCTGGATTTGTTTCTGAAAGCTTATTAGTGAAGTACAAGATG CCTCGGCCCCTGATGATGACATTTGTTCTCCTTTTGGCATGCGTAGGCCACCTCCTCATTGCCTTCCCCTTCCCGGGTTCAGTCTATGTAGCATCGGTGA TTATGGGGTTCGCATTTGGTGCACAATTGCCATTGCTGTTCGCTATAATCTCTGAGCTCTTTGGCCTAAAGTACTACTCTACATTGTTCAATTGTGGACA GTTAGCTAGTCCTCTTGGGTCATATATACTTAATGTGAAGATCACTGGACACTTGTATGATCATGAAGCACTGAAAGAGCTAGCAAAGAAGGGTATGAAT AGATCATCAGTGAAGGAACTGATCTGCATGGGGGTCCAGTGTTACAGGGTACCCTTTATAATTTTGTCTTCTGTGACATTGTTTGGTGCTCTTATTTCAC TGGTTTTGGTGATGAGGACAAGGAAATTTTACAGCAGCGATATATACAAGAAGTTTAGAGAGATTCATGGAGTGAGCTGA
AA sequence Show only first row Show all	>Potri.004G215600.1 pacid=42794903 polypeptide=Potri.004G215600.1.p locus=Potri.004G215600 ID=Potri.004G215600.1.v4.1 annot-version=v4.1 MGDPWEFAVHAINGRWFSVFASFLIMAGAGATYLFGTYSKDIKATLGYDQTTLNLLGFFKDLGANVGVFSGLLAEVTPTWFVLLVGSAMNFAGYFMIWLA VTQKIARPAVWQMCLYICIGANSQNFANTGALVTCVKNFPESRGVMLGLLKGFVGLSGAILTQFYLAIYGTDSKSLILLIGWLPAALSVIFVYTVRERKP ERQPNELRVFYHFLYVSIVLALFLMAMNIVEKQVDFSKAAYAGSAAVVCAMLFVPLIIAIREDWVQWNLKNQDGMKPATETTVDRALDIAPEVKSEVSKD KEEKAKESCFVSICHKPERGEDYTILQALLSMDMLILFAATFCGLGGSLTAVDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFSGFVSESLLVKYKM PRPLMMTFVLLLACVGHLLIAFPFPGSVYVASVIMGFAFGAQLPLLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKITGHLYDHEALKELAKKGMN RSSVKELICMGVQCYRVPFIILSSVTLFGALISLVLVMRTRKFYSSDIYKKFREIHGVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28120			Major facilitator superfamily ...		Potri.004G215600 [exp]	0	1
AT2G28120			Major facilitator superfamily ...		Potri.001G194500 [exp]	1.00	0.7830
AT1G47380			Protein phosphatase 2C family ...		Potri.014G031200 [exp]	3.16	0.7014
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.001G060500 [exp]	12.72	0.6704
					Potri.004G178500 [exp]	14.83	0.6198
AT4G23440			Disease resistance protein (TI...		Potri.003G129600 [exp]	21.90	0.6501
AT1G03700			Uncharacterised protein family...		Potri.013G131700 [exp]	36.00	0.6569
AT2G24420			DNA repair ATPase-related (.1....		Potri.006G276900 [exp]	39.16	0.5933
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Potri.017G133200 [exp]	40.49	0.6275
AT4G18820			AAA-type ATPase family protein...		Potri.011G071300 [exp]	51.16	0.6442
					Potri.008G185900 [exp]	61.33	0.5720

Compare expression of checked genes

Potri.004G215600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.