Plant FIBer expression Database

Potri.004G216400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G216400.1 pacid=42795312 polypeptide=Potri.004G216400.1.p locus=Potri.004G216400 ID=Potri.004G216400.1.v4.1 annot-version=v4.1
ATGGATTTGCCAATGGATGCGAAAATATTCAAGTCCAAGGTGACTCTACTAGTGCTAGCTGAGTCTGCAAACTGGTCAGGAATTGAAGAAACATTGAGGA
GTAGCAGAGATTTGACCGTCAAGTCTATTAATCGAGAAACAGGTTTTATATCAATTGAAGGTAGAATTGACCCAGACAAAGTTGTTGCAATGCTTCAAAA
AGTAGAGAAAGATGTTTATTTTGTTAATATGGAGGTTGAAGATAATTCAGACAAAACGGACGTTGTCACGATGGAAAATAAAATAAAGGAAATTTGTGGG
ATCTCCGATGAAACATTGGGCTCTCCAACAAAAAAATATACAACTGTGGAGAAATTCAAGGCGACTCTAGCAGTGGCATCTAGCTCTCCAGATTGGTCTA
AAATTGAAGAAACATTGAGGAGCTCAAGAGAAGTGACCGTCAAGTCCATTAACAAAGAAGAAGGCTCGATATCAATTGAAAGTAAAGTTGATCCAAAAGG
AGTGGTCGAGATGCTTGAAGGGGTAGAGAAACATGTCTACATCGTTAATCTCGACGTTGAAAGTAAAATTGATCCAGAAATAAGGAGAATGCTCGAATCC
TTGGATTCGGCACAGGAAAACCCTCCGAGTTAA
AA sequence
>Potri.004G216400.1 pacid=42795312 polypeptide=Potri.004G216400.1.p locus=Potri.004G216400 ID=Potri.004G216400.1.v4.1 annot-version=v4.1
MDLPMDAKIFKSKVTLLVLAESANWSGIEETLRSSRDLTVKSINRETGFISIEGRIDPDKVVAMLQKVEKDVYFVNMEVEDNSDKTDVVTMENKIKEICG
ISDETLGSPTKKYTTVEKFKATLAVASSSPDWSKIEETLRSSREVTVKSINKEEGSISIESKVDPKGVVEMLEGVEKHVYIVNLDVESKIDPEIRRMLES
LDSAQENPPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G216400
[exp]
0 1
Potri.001G380550
[exp]
14.62 0.9259
Potri.002G208830
[exp]
23.95 0.8280
AT3G02310 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K... Potri.004G115500
[exp]
26.22 0.9914
AT2G01950 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like ... Potri.010G058850
[exp]
28.49 0.9329
Potri.010G137500
[exp]
30.06 0.9016
AT4G33230 Plant invertase/pectin methyle... Potri.003G021300
[exp]
41.56 0.9256
AT5G62490 ATHVA22B ARABIDOPSIS THALIANA HVA22 HOM... Potri.014G148600
[exp]
45.43 0.8649
AT4G16295 SPH1 S-protein homologue 1 (.1) Potri.002G252500
[exp]
65.72 0.8230
ATCG01300 ATCG01300.1, RP... ribosomal protein L23 (.1) Potri.004G104101
[exp]
68.14 0.9914
Potri.006G102050
[exp]
73.02 0.9914

Potri.004G216400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.