Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01470 331 / 2e-115 ATTIP1.3, GAMMA-TIP3, TIP1;3 tonoplast intrinsic protein 1;3 (.1) AT2G36830 328 / 3e-114 TIP1;1, GAMMA-TIP1, GAMMA-TIP TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) AT3G26520 314 / 1e-108 TIP1;2, SITIP, GAMMA-TIP2, TIP2 SALT-STRESS INDUCIBLE TONOPLAST INTRINSIC PROTEIN, tonoplast intrinsic protein 2 (.1) AT3G16240 259 / 3e-87 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1) AT5G47450 254 / 4e-85 ATTIP2;3, DELTA-TIP3 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1) AT1G73190 237 / 4e-78 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT1G17810 233 / 1e-76 BETA-TIP beta-tonoplast intrinsic protein (.1) AT4G17340 231 / 3e-76 TIP2;2, DELTA-TIP2 tonoplast intrinsic protein 2;2 (.1) AT2G25810 200 / 6e-64 TIP4;1 tonoplast intrinsic protein 4;1 (.1) AT3G47440 160 / 2e-48 TIP5;1 tonoplast intrinsic protein 5;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G005400 [exp] 419 / 4e-150 AT2G36830 355 / 7e-125 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.010G209900 [exp] 313 / 4e-108 AT4G01470 389 / 2e-138 tonoplast intrinsic protein 1;3 (.1) Potri.016G098200 [exp] 312 / 6e-108 AT2G36830 354 / 1e-124 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.008G050700 [exp] 308 / 3e-106 AT4G01470 387 / 2e-137 tonoplast intrinsic protein 1;3 (.1) Potri.006G121700 [exp] 307 / 5e-106 AT2G36830 345 / 6e-121 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.009G027200 [exp] 306 / 1e-105 AT4G01470 367 / 7e-130 tonoplast intrinsic protein 1;3 (.1) Potri.001G235300 [exp] 305 / 3e-105 AT4G01470 375 / 8e-133 tonoplast intrinsic protein 1;3 (.1) Potri.001G186700 [exp] 268 / 1e-90 AT3G16240 372 / 8e-132 delta tonoplast integral protein (.1) Potri.003G050900 [exp] 261 / 6e-88 AT3G16240 311 / 5e-108 delta tonoplast integral protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021510 [exp] 341 / 3e-119 AT2G36830 402 / 9e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10022611 [exp] 338 / 3e-118 AT2G36830 403 / 5e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10003288 [exp] 320 / 6e-111 AT4G01470 388 / 6e-138 tonoplast intrinsic protein 1;3 (.1) Lus10023913 [exp] 314 / 1e-108 AT2G36830 391 / 3e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10005885 [exp] 308 / 2e-106 AT4G01470 395 / 1e-140 tonoplast intrinsic protein 1;3 (.1) Lus10040863 [exp] 308 / 3e-106 AT4G01470 394 / 2e-140 tonoplast intrinsic protein 1;3 (.1) Lus10014411 [exp] 305 / 3e-105 AT2G36830 390 / 4e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10038293 [exp] 259 / 6e-87 AT3G16240 396 / 2e-141 delta tonoplast integral protein (.1) Lus10025808 [exp] 253 / 2e-84 AT3G16240 389 / 2e-138 delta tonoplast integral protein (.1) Lus10038324 [exp] 238 / 7e-79 AT1G73190 380 / 1e-134 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.004G216500.1 pacid=42796542 polypeptide=Potri.004G216500.1.p locus=Potri.004G216500 ID=Potri.004G216500.1.v4.1 annot-version=v4.1 ATGCGTAATTTTATTATCATCGAACGGATAACGATCGGAAGGGTGGAGGATGACTTTCATTCTAATGCATTCAAGGCTGCATTGGCTGAGTTCATCAGTA CCTTAATTTTTGTGTTTGCTGGACAAGGGTCAACTATGGCCTATAACAAACTCACATCTAATGCACCAACATCCCCAGCTGGGCTGATTGCCGTGGCATT GGCACACGCGTTTGGCCTATTTGTGGGAGTTGCTGTCAGTGCCAACATCTCGGGAGGCCATGTCAATCCGGCCGTCACCTTTGGTGCCTTCATTGGTGGC AACATCTCACTCCTCCGTGGCATTCTGTATTGGATTGCTCAACTCCTTGGCTCCACCGTCGCTTGCTTGCTTCTTAAGTATACCACTCATCATATGACAG TCTCAGTATTCACTTTGTCCCCTGGGGTGACTGTATGGAACGCATTTGTCTTCGAGATTGTAATGACTTTTGCCCTAGTTTACACCGTATATGCAACAGC CATTGATCCAAAGAAAGGTGACGTGGGAGTCATTGCACCTCTAGCCATTGGCTTTGTACTTGGAGCTAACATTTTGGTTGGTGGAGCATTTGAAGGAGCA GCTTTGAACCCCGCCGTGCCTTTTGGACCGGCTTTGGTGAGCTGGAACTGGTACCACCACTGGGTTTACTGGGCTGGACCTTTGATCGGAGGCGGGCTTG CCGGGATTGTTTACGAGCTTATCTTCATGAGCCACAGTACTCATGAGCCCCTGCCCGGTGGAGAGTTTTAG
AA sequence Show only first row Show all	>Potri.004G216500.1 pacid=42796542 polypeptide=Potri.004G216500.1.p locus=Potri.004G216500 ID=Potri.004G216500.1.v4.1 annot-version=v4.1 MRNFIIIERITIGRVEDDFHSNAFKAALAEFISTLIFVFAGQGSTMAYNKLTSNAPTSPAGLIAVALAHAFGLFVGVAVSANISGGHVNPAVTFGAFIGG NISLLRGILYWIAQLLGSTVACLLLKYTTHHMTVSVFTLSPGVTVWNAFVFEIVMTFALVYTVYATAIDPKKGDVGVIAPLAIGFVLGANILVGGAFEGA ALNPAVPFGPALVSWNWYHHWVYWAGPLIGGGLAGIVYELIFMSHSTHEPLPGGEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.004G216500 [exp]	0	1
AT5G44680			DNA glycosylase superfamily pr...		Potri.003G156500 [exp]	2.23	0.9769
					Potri.007G097700 [exp]	2.44	0.9847
AT4G18830	OFP	ATOFP5, OFP5	ovate family protein 5 (.1)		Potri.015G004300 [exp]	3.46	0.9774
AT3G22640		PAP85	cupin family protein (.1)		Potri.006G002500 [exp]	3.87	0.9788
					Potri.016G139350 [exp]	4.58	0.9732
					Potri.002G138100 [exp]	4.79	0.9368
AT3G57030			Calcium-dependent phosphotries...		Potri.008G109966 [exp]	5.19	0.9698
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Potri.002G019800 [exp]	6.24	0.9528
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.018G152600 [exp]	6.70	0.9491
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Potri.011G044300 [exp]	7.21	0.9308	GAL1.6

Compare expression of checked genes

Potri.004G216500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.