Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28200 172 / 4e-52 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 162 / 4e-48 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G04390 152 / 3e-43 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G10470 138 / 9e-38 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G37430 100 / 2e-25 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G28710 85 / 5e-20 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G53600 83 / 6e-19 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G59820 80 / 4e-18 C2H2ZnF ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) AT3G46080 80 / 6e-18 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G19580 78 / 2e-16 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G004800 [exp] 421 / 4e-149 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 181 / 2e-55 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 171 / 3e-51 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 170 / 6e-51 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 129 / 6e-36 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 110 / 4e-29 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.009G027700 [exp] 106 / 2e-27 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) Potri.010G209400 [exp] 103 / 1e-26 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.001G235800 [exp] 91 / 6e-22 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021409 [exp] 173 / 2e-52 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10023912 [exp] 143 / 5e-41 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10023540 [exp] 135 / 1e-37 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 119 / 3e-32 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10040425 [exp] 114 / 8e-31 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10030330 [exp] 108 / 2e-28 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10038674 [exp] 112 / 1e-27 AT2G28200 162 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10037942 [exp] 110 / 4e-27 AT5G04390 198 / 2e-59 C2H2-type zinc finger family protein (.1) Lus10024428 [exp] 100 / 2e-25 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021509 [exp] 94 / 4e-23 AT5G03510 103 / 3e-27 C2H2-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.004G216900.1 pacid=42794988 polypeptide=Potri.004G216900.1.p locus=Potri.004G216900 ID=Potri.004G216900.1.v4.1 annot-version=v4.1 ATGGATATGGAAGCTCAAGATGATTTCGTGGGGTCTAATGATCTTACTCAGATCATTAAAGGCAAACGCACCAAGCGCCAAAGGTCATCGTCCCCGTATA TGGTGATGACCTCTAGCTCATCAAGTGGTTATGGTGGCGGTGATGGCGGAGGAGAGAGAGGAGTGCTTATAGAGGAGCATGGTTCAATTTCCTCCCCTAC AACTTCTAGTGAGGTTACTGAGAGGACAGAAGAAGAAGAAGATATGGCTAATTGCTTGATTCTACTAGCACAAGGTGACCGTCCAAAGCAAATTCATGAA AACAAAAGCGGTAAAGTGGAGAAATTTAGAGCTCGAAAATCATCAGACATGTCCACACCAACTATTAACAAGGCAGGTTTCTTGGTATACGAATGCAAAA CTTGTAACCGGAGTTTCCCATCTTTCCAAGCATTAGGCGGGCACAGAGCCAGTCACAAAAGGCCTAAAGCCACAGCGGAAGAGAAAAAAGGTCTTGTGGT GGCATCAATGGAGGATCTTGGCGTTTGTCAATTGATTAAAAGGAGTAATCTTGATCCTTCTCTTTCTCTCCAAATAGGCCACAACAATAACGTCAACAAG GGTTTTCAGGGTAACAAGGCTAAGACTCATGAGTGCTCAATTTGTGGCTCGGAGTTCATGTCTGGCCAAGCTCTTGGCGGTCACATGAGAAGGCACAGGG CTAACACAGGCAACCAGGCGGGCATGATCACTACTGATTCATCCAGTGCCACCGCTGAGTCTAATATTCATGGTGATCATCATCAGATCAAGCCAAAAAA TATTTTGGCCTTGGATCTTAATCTACCAGCTCCCGAGGATGATCATCACCTTCGTGAATCCAATTTCCAATTCACGTCAACCCGGCAAGCACTAGTGTTC TCCGCCACAGCCTTGGTGGATTGCCATTACTAG
AA sequence Show only first row Show all	>Potri.004G216900.1 pacid=42794988 polypeptide=Potri.004G216900.1.p locus=Potri.004G216900 ID=Potri.004G216900.1.v4.1 annot-version=v4.1 MDMEAQDDFVGSNDLTQIIKGKRTKRQRSSSPYMVMTSSSSSGYGGGDGGGERGVLIEEHGSISSPTTSSEVTERTEEEEDMANCLILLAQGDRPKQIHE NKSGKVEKFRARKSSDMSTPTINKAGFLVYECKTCNRSFPSFQALGGHRASHKRPKATAEEKKGLVVASMEDLGVCQLIKRSNLDPSLSLQIGHNNNVNK GFQGNKAKTHECSICGSEFMSGQALGGHMRRHRANTGNQAGMITTDSSSATAESNIHGDHHQIKPKNILALDLNLPAPEDDHHLRESNFQFTSTRQALVF SATALVDCHY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.004G216900 [exp]	0	1
AT1G79990			structural molecules (.1.2.3.4...		Potri.001G179500 [exp]	2.44	0.6979
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Potri.002G232500 [exp]	4.89	0.6686
AT1G16210			unknown protein		Potri.009G140200 [exp]	8.48	0.6668
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.011G067600 [exp]	14.07	0.6260
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Potri.008G148300 [exp]	14.07	0.6025	CUL3.1
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.001G140000 [exp]	20.14	0.6075
AT4G19450			Major facilitator superfamily ...		Potri.001G128200 [exp]	22.44	0.6082
AT2G39725			LYR family of Fe/S cluster bio...		Potri.001G018100 [exp]	26.92	0.6630
AT2G06530		VPS2.1	SNF7 family protein (.1)		Potri.001G170400 [exp]	30.33	0.6420
AT3G57790			Pectin lyase-like superfamily ...		Potri.016G051200 [exp]	30.74	0.5552

Compare expression of checked genes

Potri.004G216900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.