Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL9.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44890 195 / 2e-63 RP19, RPL9 ribosomal protein L9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037372 [exp] 196 / 6e-64 AT3G44890 270 / 4e-93 ribosomal protein L9 (.1) Lus10041346 [exp] 194 / 5e-63 AT3G44890 270 / 5e-93 ribosomal protein L9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01281 [poplar] [flax] Ribosomal_L9_N Ribosomal protein L9, N-terminal domain PF03948 [poplar] [flax] Ribosomal_L9_C Ribosomal protein L9, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G217000.2 pacid=42793979 polypeptide=Potri.004G217000.2.p locus=Potri.004G217000 ID=Potri.004G217000.2.v4.1 annot-version=v4.1 ATGGCATCACCATTTACAGCGGCAACAACTCTTTCATGCACTTCTTCTTCTTGGCTTCACGGTTTTGTCGGACCCACAAATGAAATCTCCAAGTTCCCAG ACAAAAGAATACCTATGTTGGTTTTAGCTCAGAAGAAAGCCAAAAAGACAAGAAAGATAATATTGAAAGAGGATGTGACAGATTTGGGAAAGAAAGGGCA ACTAGTTGATGTCAAGGCTGGCTTTTACAGGAATTTTCTGCTGCCTACAGGCAAGGCTCAGATTGTCACTCCTGGTTTAGTCAAGGAAATGCGGATGGAA GAGGAAAGAATTGAGGCTGAGAAAAAACGGGTAAAAGAAGAGGCACAGCAGCTGGCACTCATATTTGAAACTGTTGGAGCATTCAAGGTCAAGCGCAAAG GGGGAAAGGGAAGACAGATATTTGGGACTGTAACTGCTCAAGATCTTGTTGATATAATCAAGGCACAGATTCAGAGGGATGTGGACAAGCGGATTGTTTC TCTTCCAGATATCAGGGAAACAGGAGAATACATTGCTGAACTTAAGCTTCACCCAGAAGTTACTGCTCAGGTGAGGTTGAATGTCTATGCTAACTAA
AA sequence Show only first row Show all	>Potri.004G217000.2 pacid=42793979 polypeptide=Potri.004G217000.2.p locus=Potri.004G217000 ID=Potri.004G217000.2.v4.1 annot-version=v4.1 MASPFTAATTLSCTSSSWLHGFVGPTNEISKFPDKRIPMLVLAQKKAKKTRKIILKEDVTDLGKKGQLVDVKAGFYRNFLLPTGKAQIVTPGLVKEMRME EERIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGRQIFGTVTAQDLVDIIKAQIQRDVDKRIVSLPDIRETGEYIAELKLHPEVTAQVRLNVYAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Potri.004G217000 [exp]	0	1	Pt-RPL9.3
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Potri.002G033300 [exp]	1.41	0.9838
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Potri.013G006100 [exp]	3.46	0.9761
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Potri.012G068500 [exp]	3.46	0.9778
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079600 [exp]	9.89	0.9641
AT2G33450			Ribosomal L28 family (.1)		Potri.010G068500 [exp]	10.19	0.9726
AT3G51510			unknown protein		Potri.001G455900 [exp]	10.90	0.9672
AT5G58330			lactate/malate dehydrogenase f...		Potri.008G031700 [exp]	11.83	0.9688
AT2G03420			unknown protein		Potri.010G161400 [exp]	16.24	0.9655
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.005G186800 [exp]	16.43	0.9669	PtrTrxm9
AT5G64480			unknown protein		Potri.001G286200 [exp]	16.49	0.9633

Compare expression of checked genes

Potri.004G217000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.