Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22890 316 / 1e-105 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G34370 242 / 8e-77 C2H2ZnF STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT1G13290 100 / 8e-24 C2H2ZnF WIP6, DOT5 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) AT1G34790 99 / 3e-23 C2H2ZnF WIP1, TT1 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G44160 99 / 1e-22 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT1G08290 98 / 1e-22 C2H2ZnF WIP3 WIP domain protein 3 (.1) AT3G20880 98 / 3e-22 C2H2ZnF WIP4 WIP domain protein 4 (.1) AT3G45260 98 / 4e-22 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G60470 98 / 4e-22 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G03840 98 / 6e-22 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G094100 [exp] 245 / 5e-78 AT1G34370 236 / 3e-75 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.013G114600 [exp] 247 / 8e-77 AT1G34370 495 / 3e-172 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.019G085400 [exp] 243 / 2e-75 AT1G34370 478 / 1e-165 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.010G129000 [exp] 102 / 8e-25 AT1G13290 352 / 1e-122 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Potri.009G143700 [exp] 102 / 3e-24 AT1G08290 364 / 7e-126 WIP domain protein 3 (.1) Potri.004G183900 [exp] 102 / 4e-24 AT1G08290 352 / 4e-121 WIP domain protein 3 (.1) Potri.014G180600 [exp] 102 / 1e-23 AT3G50700 368 / 3e-123 indeterminate(ID)-domain 2 (.1) Potri.002G098200 [exp] 98 / 7e-23 AT1G34790 311 / 3e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G129300 [exp] 100 / 2e-22 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009435 [exp] 250 / 1e-78 AT1G34370 506 / 4e-177 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10023138 [exp] 236 / 2e-74 AT1G34370 236 / 4e-75 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10006071 [exp] 210 / 3e-63 AT1G34370 448 / 2e-154 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10021700 [exp] 102 / 5e-24 AT1G13290 333 / 2e-114 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10035044 [exp] 101 / 7e-24 AT1G13290 338 / 1e-116 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10020597 [exp] 101 / 2e-23 AT1G08290 335 / 7e-114 WIP domain protein 3 (.1) Lus10011495 [exp] 94 / 3e-23 AT1G34370 97 / 6e-25 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10004887 [exp] 100 / 4e-23 AT1G08290 357 / 9e-123 WIP domain protein 3 (.1) Lus10033454 [exp] 99 / 5e-23 AT1G34790 315 / 1e-107 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10019927 [exp] 100 / 7e-23 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G217100.1 pacid=42795147 polypeptide=Potri.004G217100.1.p locus=Potri.004G217100 ID=Potri.004G217100.1.v4.1 annot-version=v4.1 ATGATTTCAGGGGACTCCTCTTGCTTCCCTAGTGCCTCCTCACAAGGCTTGCATATGTATCAAGCTGTGACAGAAGATGTTGTTTCTTCAACTCTTGAAG CAAGTTCCAGCTCAGAGGCTCATTCAAATTCTCTTCTCTACAATCTCTCCCTTCTCAAAGACAAGGTCCATCAAGTGGAGTCGTTGATCAGCATCCTTAT CGCACCTGATCATAGCCAGCCTAATGATCATAAGTCAACTTCGGTAGCTTTAGCCAACATGAGCACCATGATTCAAGAAATAATTGTCGCTGCATCTTCA GTGATGTTCACATGCCAACAGATGGGTATTGGTAACGATATTTCAGGCAACAATATCAACACAAATGACTTGCACCAGCCGCGTGGCCGCAAGGCTGAAG AAAGTTCCTTGTTATCACAACCAAATTTTGGTGGCAACCATGCTGGTAACATCGGCCAAGAAAGAGGGCAAAGCTTCTTCTCTCCCGAATCTTTTGACTG GTGCAGTGATAACTATAATGATAACTGTAATACTAATGAGAATATTCGAGGAATCCATGTTAGCAGCAATAATAGGGTTGATATTAGGAGAGAAATATTG TCTCAAGGGGGTGAAGGTATTTTACAAGGGCAATCACCAAAGAATTATGATATCATCGAATTGGATGCAGCCGATTTATTAGCCAAGTATACTCATTATT GCCAAGTCTGTGGCAAAGGGTTCAAGCGTGATGCTAATTTGAGGATGCACATGAGAGCCCATGGTGATGAATACAAGACTACTGCAGCTTTGAGCAATCC GATGAAGAACAACCCAACTGCAACGCCAGAAAATAAAGAAGCTTCGATGAAATTGCCTAGAAAATATTCGTGTCCACATGAAGGGTGTAGGTGGAACAGG AAACACGCCAAGTTCCAGCCACTGAAATCCATGATTTGTGTAAAAAATCATTACAAGAGGAGCCATTGCCCCAAGATGTATGTTTGCAAGCGTTGCAGTA GGAAGCAATTCTCGGTGCTGTCTGATCTACGGACTCATGAGAAGCACTGTGGGGATCTCAAGTGGCTATGCTCATGTGGTACAACATTTTCAAGGAAGGA TAAGCTTATGGGTCATGTTGCCTTGTTCTTTGGGCACACTCCAGCTATAAGTGGTTTGACAAGGCCTACAAAATTCGAGAACCAGACAATGCAAATGCAT CTAGATCATGATAGGGGATGA
AA sequence Show only first row Show all	>Potri.004G217100.1 pacid=42795147 polypeptide=Potri.004G217100.1.p locus=Potri.004G217100 ID=Potri.004G217100.1.v4.1 annot-version=v4.1 MISGDSSCFPSASSQGLHMYQAVTEDVVSSTLEASSSSEAHSNSLLYNLSLLKDKVHQVESLISILIAPDHSQPNDHKSTSVALANMSTMIQEIIVAASS VMFTCQQMGIGNDISGNNINTNDLHQPRGRKAEESSLLSQPNFGGNHAGNIGQERGQSFFSPESFDWCSDNYNDNCNTNENIRGIHVSSNNRVDIRREIL SQGGEGILQGQSPKNYDIIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALSNPMKNNPTATPENKEASMKLPRKYSCPHEGCRWNR KHAKFQPLKSMICVKNHYKRSHCPKMYVCKRCSRKQFSVLSDLRTHEKHCGDLKWLCSCGTTFSRKDKLMGHVALFFGHTPAISGLTRPTKFENQTMQMH LDHDRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22890	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.004G217100 [exp]	0	1
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.014G131800 [exp]	1.73	0.9776
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.009G075100 [exp]	2.00	0.9698
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.007G009400 [exp]	4.24	0.9705
					Potri.003G092900 [exp]	4.69	0.9564
AT4G28890			RING/U-box superfamily protein...		Potri.018G085001 [exp]	5.65	0.9673
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	5.65	0.9720
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G002800 [exp]	6.92	0.9654	CYP716D1
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029700 [exp]	7.00	0.9676
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.012G137300 [exp]	8.66	0.9688
AT1G66120			AMP-dependent synthetase and l...		Potri.016G034800 [exp]	9.79	0.9683

Compare expression of checked genes

Potri.004G217100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.