Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27950 533 / 2e-177 Ring/U-Box superfamily protein (.1) AT5G04460 265 / 4e-76 RING/U-box superfamily protein (.1.2.3) AT2G34920 76 / 4e-14 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT1G30860 76 / 6e-14 RING/U-box superfamily protein (.1) AT5G19080 46 / 7e-05 RING/U-box superfamily protein (.1) AT4G20160 46 / 0.0001 unknown protein AT3G06140 45 / 0.0001 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G003500 [exp] 1234 / 0 AT2G27950 578 / 0.0 Ring/U-Box superfamily protein (.1) Potri.008G030100 [exp] 304 / 2e-90 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.010G231100 [exp] 294 / 2e-86 AT5G04460 768 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.003G156400 [exp] 95 / 1e-19 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.001G074800 [exp] 95 / 1e-19 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.008G202700 [exp] 47 / 3e-05 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 47 / 4e-05 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 47 / 4e-05 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 46 / 8e-05 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021403 [exp] 668 / 0 AT2G27950 470 / 5e-154 Ring/U-Box superfamily protein (.1) Lus10016162 [exp] 319 / 4e-100 AT2G27950 278 / 6e-85 Ring/U-Box superfamily protein (.1) Lus10037928 [exp] 295 / 8e-87 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10038656 [exp] 293 / 3e-86 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10028827 [exp] 254 / 1e-72 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10017455 [exp] 249 / 1e-70 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10038389 [exp] 54 / 3e-07 AT4G20160 155 / 2e-40 unknown protein Lus10036249 [exp] 54 / 8e-07 AT4G20160 182 / 3e-48 unknown protein Lus10004419 [exp] 49 / 2e-05 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10034030 [exp] 49 / 2e-05 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.004G217700.2 pacid=42795351 polypeptide=Potri.004G217700.2.p locus=Potri.004G217700 ID=Potri.004G217700.2.v4.1 annot-version=v4.1 ATGGCCATTGCTAGTCTACACAATGTTTCTGTGCTTGATTCTTCCTTCCTCAGGGAATCTCAATCAGAAGTAGTGAGAAGACGGGGTGATGATGGGAGAA GCACCCGGACATCGTCCCACCTGCAAATACAGCAGGAGCTTGAGGATGAGCATGTGGTGAGTCATGTCCAAGGGAGGGTTAGTGATAGATTGGTCCAACA TCAGAGTGATGGATCGAGTACTGATCTATTGAGGGTGGATGCTTCTGACAGTCACAGTAATGGTCAAAGTGGTTCTTCGGAGGGTGGGAGTGCTGGGGAG AGTGAGTATGGACAATGGTCCCCTGGTCCAATTGGATCAGAGAATGGACAAGAGGATTCTTCTGATCTAGGAGAGGTTGGAAGGGAGAGGGTAAGGCAGA TTTTTCGGGAATGGATGAACAGTGGTGCAAGGGAATGCGCATCCAGTATTTCCCGAAGGAACAATGGTTCTAGAGCTGAATGGCTTGGTGAAACTGAGCA GGAAAGAGTAAGGATTATAAGGGAGTGGGTGCAAATGAACACCCAGCAAAGAGGTGCTTGTGTTGATCGTAGAGAAGAACAAGGTTCCGAAGTTGCTGGT CAAATTGAACAAGTTCTTGATGGATTGGCTGTTAACCACAATGATGGCCAAGCTGAGAATACTCGGAGGGGTATTCGTCGATTGTGTGGCAGACAAGCTT TGCTTGATATGCTTAAAAAGCATGAGAGAGAAAGGCAAAGTGAGCTGCGAGGTCTGTCGGAGCATCAGGTTGTAACACAATTCGCTCATCGAAACCGCAT TCAGTCATTGCTTCGAGGTAGGTTCTTGCGAAATGACAGGATCATTGAAGATGAGAGGCCCGCATCCCCAGCAGCAAGTGAATTGGGTTTATTGAGGCAA AGACATACCGTTTCTGATCTGAGGGAAGGATTTTTCTCAAGATTGGACCATTCTGTTTATGGACAAGCAAGCAGCAATGTCTCTGATACCTCATCTAACA CTGACATGAATGGTAATAGAAGTGAACAAATTGAAGCAAATAACTCACAACAGGTCATAGATGAATTTTATGTACAAACCGAGTCAAATACTGAGGAAAT TGGTAGCCTTGGGTTGTTGGATGGTAGAGCTGATATAGAAGATAACATAATTGATGAAACAAGTGGGCAAAACTTTACTGCTCATTCAGTAGAGGGGCCA AGGCAAGTTTCAGACTCTGATGTGGGAGGCAGGCAACAGTTAGCCAACGTTGCATTTGTTGAAAGGAGGGATGGTACCAGAGAAGAGGCTAGTGACCACA GGTGGGGAGGTACTAATAACGAATCATCCCAAGAAACTGTGGGAAGTGAAGCTGAGGAAGACATGCAGCTTCTATCAACGACGGAAGTATTTTCTCAACA ATCTGAGGCAGATAGGGGGGATAGTGTCATCCCCTTGTTATCCAATCATTTGATTGATTTGGAAGCCACTGCAAATGAAAGTGTAAATTGGCAAGAATCT GCTGCACCACTGGAACAGTGGCAGAACCAACTCCTGGAAAATGAAGGGCAGCACTCATTTGAAGCTAGTCTAACATCTGGAGAATGGGGAGATGGGATTC AAGATAACATTGATGGTCATCAACATGAAACTGCTGCTAATGAATGGTCGGAAAATGAAGATAGAGAAGGGGCCTCTGAAGTGTGGCATGAGGATGATGG TTTTCAAGAGGCTGTGCATAGTTGGCTAACAGAGCCTTCTGATCTGGAAGCTGCACCAGTTGGTAGGATGGATCCATTTTATTTTCCTGATGATGATAAT GTATACAGCATGGAGCTCAGGGAACTCTTGAGCAGGAGAAGCGTCTCTACACTTCTTCGCAGTGGTTTCCGTGAGAGTCTTGACCAATTGATACGTTCAT ATGTTGAAAGGCAAAGCCATGCTCCCCTTGAATGGGAACTGCAAACAGCACCTACTCCTGCATCAACAGAACAAGATCTGGAGCAGCAGACTGTGGATCA GAATGAGAGTGAGGGGAATATTGTTCAAAGTCCTTCGCTTGATCTACCTTCCCGGCCTATACGCCCTGCTGAGCAGCTCTGGGATCAAGAGTCACGCCAT TATACTTGGCCACAGCATGACATGCATCCACGCTTTGGAATCGAATGGGACATTGTTAGTGATCTAAGGATTGACATGGCTAGACTACAACAAAGAATGA ATAACATGCAGAGGATGCTGGAAGCCTGCATGGACATGCAACTTGAGCTGCAACGGTCAATACAACAAGAAGTTTCAGCTGCTTTGAATCGCTCTGCCGG TTCACCAGGGATTTGTGAGGACAGTGCTCCTGAGGATAGAACTAAATGGGATCATGTGAGGAAAGGGATTTGCTGTATATGTTGTGATGGAAGTATTGAT TCCCTACTGTACAGGTGTGGGCACATGTGCACATGCTCTAAATGTGCTAATGAGTTGGTCCAAAGTGGGGAGAAGTGTCCAATGTGTAGAGCACCTGTAA TTGAGGTTATCCGTGCCTACGCTGTCTTATAA
AA sequence Show only first row Show all	>Potri.004G217700.2 pacid=42795351 polypeptide=Potri.004G217700.2.p locus=Potri.004G217700 ID=Potri.004G217700.2.v4.1 annot-version=v4.1 MAIASLHNVSVLDSSFLRESQSEVVRRRGDDGRSTRTSSHLQIQQELEDEHVVSHVQGRVSDRLVQHQSDGSSTDLLRVDASDSHSNGQSGSSEGGSAGE SEYGQWSPGPIGSENGQEDSSDLGEVGRERVRQIFREWMNSGARECASSISRRNNGSRAEWLGETEQERVRIIREWVQMNTQQRGACVDRREEQGSEVAG QIEQVLDGLAVNHNDGQAENTRRGIRRLCGRQALLDMLKKHERERQSELRGLSEHQVVTQFAHRNRIQSLLRGRFLRNDRIIEDERPASPAASELGLLRQ RHTVSDLREGFFSRLDHSVYGQASSNVSDTSSNTDMNGNRSEQIEANNSQQVIDEFYVQTESNTEEIGSLGLLDGRADIEDNIIDETSGQNFTAHSVEGP RQVSDSDVGGRQQLANVAFVERRDGTREEASDHRWGGTNNESSQETVGSEAEEDMQLLSTTEVFSQQSEADRGDSVIPLLSNHLIDLEATANESVNWQES AAPLEQWQNQLLENEGQHSFEASLTSGEWGDGIQDNIDGHQHETAANEWSENEDREGASEVWHEDDGFQEAVHSWLTEPSDLEAAPVGRMDPFYFPDDDN VYSMELRELLSRRSVSTLLRSGFRESLDQLIRSYVERQSHAPLEWELQTAPTPASTEQDLEQQTVDQNESEGNIVQSPSLDLPSRPIRPAEQLWDQESRH YTWPQHDMHPRFGIEWDIVSDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIQQEVSAALNRSAGSPGICEDSAPEDRTKWDHVRKGICCICCDGSID SLLYRCGHMCTCSKCANELVQSGEKCPMCRAPVIEVIRAYAVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27950			Ring/U-Box superfamily protein...		Potri.004G217700 [exp]	0	1
AT2G40980			Protein kinase superfamily pro...		Potri.010G173100 [exp]	2.23	0.6737
AT5G65290			LMBR1-like membrane protein (....		Potri.007G096900 [exp]	2.44	0.7149
AT2G21300			ATP binding microtubule motor ...		Potri.009G124500 [exp]	6.70	0.6961
AT4G32620			Enhancer of polycomb-like tran...		Potri.018G034900 [exp]	6.92	0.7289
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Potri.012G119200 [exp]	12.64	0.6569
AT1G22930			T-complex protein 11 (.1.2)		Potri.004G217800 [exp]	13.85	0.6697
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.005G230500 [exp]	16.12	0.6521
AT5G53140			Protein phosphatase 2C family ...		Potri.012G002100 [exp]	21.21	0.6279
AT2G27950			Ring/U-Box superfamily protein...		Potri.009G003500 [exp]	21.72	0.6879
AT2G16485			nucleic acid binding;zinc ion ...		Potri.007G016000 [exp]	26.58	0.6678

Compare expression of checked genes

Potri.004G217700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.