Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22930 1040 / 0 T-complex protein 11 (.1.2) AT4G09150 424 / 1e-129 T-complex protein 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G018500 [exp] 1788 / 0 AT1G22930 993 / 0.0 T-complex protein 11 (.1.2) Potri.013G105300 [exp] 1056 / 0 AT1G22930 893 / 0.0 T-complex protein 11 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015468 [exp] 1367 / 0 AT1G22930 1083 / 0.0 T-complex protein 11 (.1.2) Lus10001363 [exp] 1302 / 0 AT1G22930 1056 / 0.0 T-complex protein 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05794 [poplar] [flax] Tcp11 T-complex protein 11
Representative CDS sequence Show only first row Show all	>Potri.004G217800.4 pacid=42795544 polypeptide=Potri.004G217800.4.p locus=Potri.004G217800 ID=Potri.004G217800.4.v4.1 annot-version=v4.1 ATGGATACCGGAGTAGAATCGTCGCCGGAGACGGGGGTGGTGGTTGGTGGAATTGCGCTTGATTTTCCTGTCAATGATACGGTATCGTTTTCGTCTCCGA GGAGAATACCGAGAAAGCTTCAAAAAAGACTCTTAGAAGCCAAGACTCCAACAACCGGTAGTGTTGAAGAAATCGAAGCTAAACTTCGACACGCTCATCT CCGTAGACAGGAATTCTATGAGAGGTTGTCAAGCAAGGCTAGACCAAAGCCAAGAAGCCCCTCACAGTGTTCATCTCATGAAGAAGACCTTGCGCAACGC CTTGAAGCAAAGCTTCACGCCGCGGAGCAAAAAAGGCTGAGCATTCTGGCAAATGCTCAGATGCGCCTGGCTAGGTTGCATGAGTTGCGGCAGGCAGCTA AAACTGGGGTGGAGAAGCGTTTTGAGAGAGAAAGGGAGAGGCTTGGAACAAAAGTGGAGTTACGGGTTCAGCAGGCTGAAGCAAATAGAATGCTTATGCT AAAGGCTTACAGGCAAAGAAGGGCCACACTGAAGGAGAGAACATCCCAATCATTATTGCGAAGAAGGGCTCGGGAAAGTAAGTACAAGGAGCGTGTACGT GCAGCAATTAACCAAAAGCGTGCAGCTGCTGAAATGAAGCGAATGGGATTGCTGGAAGCAGAAAAGAAGAGGGCATGTGCTAGGTTGTTGCAAGTTCAGC GAGTAGCCAGGTCTGTCTCTCACCAACGTGAGATTGAGAGGAGGAGAATGAGGGAAAAGCTGGAAGATCGATTGCAAAGGGCAAAGAGACAAAGAGCAGA ATTTTTGAGGCAAAGAGGACTTCAGCATAGTTCAGTTCGGGTAAACTGGAATAAGATGCACCAGCAGGCTGATCTCCTTTCTAGAAAATTAGCAAGGTGC TGGAGGCAGTTCCTTAGGTCAAGGAGAACTACCATAGACCTGGCAAAAGACTATGATGCCTTGAAAATCAATGAGAACTGTGTGAAGTCAATGCCATTTG AGCAGCTTGCTCGTCTGATTCAATTGACTGGTACTCTTCAGACTGTAGAAGGTCTACTTGATCGTCTTGAGAGCCGCCTTAGAGTCTCAATGGCTGTTGC TGCCATGGATCATCCTTCCAGCTTGGACAACATTGATCACCTTCTCAAAAGAGTTGCCACCCCTAAGAAAAGGACCACTCCCAGGTCTTGTACAAGGAGT AGAGAGGCCAAAAAAGTAGGTGCCTCTGGGGAGTCTGCCAGACGTGCCGCTAAAATGTCTAGGTATCCAGTGAGAATAGTTCTTTGTGCCTACATGATTT TAGGTCATCCAGATGCTGTTTTCAGTGGTCAAGGGGAGCGTGAGATTGCTCTGGCCAAGTCTGCTGAATCTTTCATCCGAGAGTTTGAGTTGTTGATAAG GATTATACTGGATGGGCCCATGCACAGTTCTGATGAGGAGTCTGAATCCATTTCACGGAAACGTTGCACGTTCAGGTCTCAGCTTGCAGCTTTTGATAAA GAATGGTGCTCCTACTTGAATTGCTTTGTGGTGTGGAAGGTTAAGGATGCACAGTCATTGGAGGAGGACTTGGTGAGAGCGGCTAGCCAGCTTGAGCTCT CTATGATCCAGAAATGCAAGCTCACCCCAGGAGGGAGTAATGATAATCTTACTCATGATATGAAAGCCATTCAGAATCAGGTTGCAGAAGATCAAAAACT TTTAAGGGAAAAGGTACAACACCTGAGTGGAGATGCTGGTATTGAGCGAATGGAAATTGCACTATCTGAAACACGATCAAAGTATTTTCAAGCCAAGGAA AATGGAAGTCCAGTAGGGTCACCAATAATGCATCTTCCATCTCCTAGCATGCCCATATATGCTCCTTCCGTTGCTAACACTGCTAATAGAAATAATGTGA GTGATGGTATTGAGAGGCCAAGCCATGTAGATCGCTCCTTGTTCAGAGAAGATACCTCCTCAGCTAAAGAATTTGGTTCCTCTGATGGCCCATCAGGTTC TGCTGTTGGAAAATTGTTAACAGAGAATGAAATGATCGTAAATGAATTTCTCCATGCGAATCGCCATGGTTTTGTTGATCGATTCAATATTTCTGACAAA GATGAAAGTAGTATCAAGGCAAAGGTGAGAGAGACAATGGAGGCGGCTTTCTGGGATAGTGTCATGGAATCAATGAAACAGGATGAGCCCAAATATGATC GGGTCGTTCAACTGGTGGGGGAGGTGAGGGATGGAATTCAGGAGCTGGCTCCAGAGAACTGGAAACAAGAGATTGTTGAAGCTATTGATCTAGATCTTCT CTCTCAGGTTCTAAAGTCAGGTAACCTGGACATTGGTTACTGTGGAAAGATTCTAGAGTTTGCAATAGTTACGTTGCAGAAACTCTCCTCTCCAGCCCAG GAGGATTTAATGAAGGCCCTGCATCAGAAATTGTTGAAAGAGTTGACTGAGACTTGTCAGACCCAAGATGAATCGAAGCATCCACATATTGCTGCAATGA TCAAGGGTCTACGCTTTGTGCTGGAGCAGATTCAGGCTCTCAAGCAAGAGATTAGTAAAGTACGAATAAGGATGATGGAGCCTTTGTTAACAGGTCCTGC TGGTTTGGATTACCTTAGAAAAGCCTTTGCCAACCATTATGGGTCTGATTCGGATGCCTGTATCTCTCTACCGCTGACAATGCAGTGGCTTTCATCTGTT AAGAATAGTGAAGATCAAGAGTGGGAAGAGCACAAGAATTCTCTCTCGTCTTTGAAGAGCAATGACAGTTCATCACAGGTTTTTGTACCTCTCACTACCC TTAGAACCGGTGGAAGCTTTCTGGTCAAAACAAATGGCAGTGCAATGGGTTCTACTTCTGTACCTTCAGAGACAGATAACCAACAACCAGAACCAGAATG CACTGGTGAAAGAATTGATCTGTTGGTGAGGCTTGGATTGTTGAAGATTGTGAGTGGGGTTTCTGGTCTGACAAAAGAAACTTTGCCTGAAACTTTTATG CTAAACCTGTCTCGGTTGAGGTCTGTGCAGGCTGAAATTCAGAAAATGATAGTAATTTCTACCAGCATTCTTGTTTACCAGCAAACCCTCCTGACGGAGC GAGCGGTAAACAGCAATGCAGACATGGAGAGCATTCTATTAGAGCGCGGTAATAAACTGTCAGAAGTCCTAGACCGTGTTGACGATGTGGGTATTGAAGA AATAGTCGAAGTAGTGAGCGGGTTCTCGCAAGATGATGAGGAGAAGCATAAGCCAAGAAAGTTAGTCATGGCTAGGATGTTAGCAAAGAGCTTGCAGGCC GGGGATCCTGTTTTTGAAATAGTTTCCCGTGCTGTTTATTTGGCTCTAAGAGGAATTGTGCTTGGGGGCAGTGGACCCCGGGGAAGAAAATTATCACAAA CGGCACTCCGGTCAATTGGAGCTGTCATGCTGGCAGAAAGAGTGGTGGCAGCTGCTGAAGTATTAGTGGTAGCAGCTACTGTATCAATCGGCGTTCACAG GCCATGGTATATAACTCTGACCGATAACATGTGA
AA sequence Show only first row Show all	>Potri.004G217800.4 pacid=42795544 polypeptide=Potri.004G217800.4.p locus=Potri.004G217800 ID=Potri.004G217800.4.v4.1 annot-version=v4.1 MDTGVESSPETGVVVGGIALDFPVNDTVSFSSPRRIPRKLQKRLLEAKTPTTGSVEEIEAKLRHAHLRRQEFYERLSSKARPKPRSPSQCSSHEEDLAQR LEAKLHAAEQKRLSILANAQMRLARLHELRQAAKTGVEKRFERERERLGTKVELRVQQAEANRMLMLKAYRQRRATLKERTSQSLLRRRARESKYKERVR AAINQKRAAAEMKRMGLLEAEKKRACARLLQVQRVARSVSHQREIERRRMREKLEDRLQRAKRQRAEFLRQRGLQHSSVRVNWNKMHQQADLLSRKLARC WRQFLRSRRTTIDLAKDYDALKINENCVKSMPFEQLARLIQLTGTLQTVEGLLDRLESRLRVSMAVAAMDHPSSLDNIDHLLKRVATPKKRTTPRSCTRS REAKKVGASGESARRAAKMSRYPVRIVLCAYMILGHPDAVFSGQGEREIALAKSAESFIREFELLIRIILDGPMHSSDEESESISRKRCTFRSQLAAFDK EWCSYLNCFVVWKVKDAQSLEEDLVRAASQLELSMIQKCKLTPGGSNDNLTHDMKAIQNQVAEDQKLLREKVQHLSGDAGIERMEIALSETRSKYFQAKE NGSPVGSPIMHLPSPSMPIYAPSVANTANRNNVSDGIERPSHVDRSLFREDTSSAKEFGSSDGPSGSAVGKLLTENEMIVNEFLHANRHGFVDRFNISDK DESSIKAKVRETMEAAFWDSVMESMKQDEPKYDRVVQLVGEVRDGIQELAPENWKQEIVEAIDLDLLSQVLKSGNLDIGYCGKILEFAIVTLQKLSSPAQ EDLMKALHQKLLKELTETCQTQDESKHPHIAAMIKGLRFVLEQIQALKQEISKVRIRMMEPLLTGPAGLDYLRKAFANHYGSDSDACISLPLTMQWLSSV KNSEDQEWEEHKNSLSSLKSNDSSSQVFVPLTTLRTGGSFLVKTNGSAMGSTSVPSETDNQQPEPECTGERIDLLVRLGLLKIVSGVSGLTKETLPETFM LNLSRLRSVQAEIQKMIVISTSILVYQQTLLTERAVNSNADMESILLERGNKLSEVLDRVDDVGIEEIVEVVSGFSQDDEEKHKPRKLVMARMLAKSLQA GDPVFEIVSRAVYLALRGIVLGGSGPRGRKLSQTALRSIGAVMLAERVVAAAEVLVVAATVSIGVHRPWYITLTDNM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22930			T-complex protein 11 (.1.2)		Potri.004G217800 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128900 [exp]	1.00	0.7947
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.005G230500 [exp]	1.73	0.7673
AT5G20260			Exostosin family protein (.1)		Potri.018G125058 [exp]	2.82	0.7591
AT4G25433			peptidoglycan-binding LysM dom...		Potri.014G077900 [exp]	10.58	0.7116
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.012G106100 [exp]	12.00	0.7548	Pt-ARF2.2
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Potri.002G129300 [exp]	12.48	0.6979	ADR1.1
AT2G27950			Ring/U-Box superfamily protein...		Potri.004G217700 [exp]	13.85	0.6697
AT1G69340			appr-1-p processing enzyme fam...		Potri.010G161500 [exp]	18.49	0.6670
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.005G186500 [exp]	20.66	0.7405	Pt-SCL1.1
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.015G105300 [exp]	21.81	0.6930	Pt-ARF2.1

Compare expression of checked genes

Potri.004G217800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.