Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22410 530 / 0 SLO1 SLOW GROWTH 1 (.1) AT3G15930 484 / 5e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 469 / 1e-156 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 447 / 4e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 439 / 2e-145 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 433 / 2e-142 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04750 420 / 3e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G05240 394 / 2e-129 MEF19 mitochondrial editing factor 19 (.1) AT3G22690 402 / 3e-129 unknown protein AT3G29230 390 / 8e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G019500 [exp] 555 / 0 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.009G044700 [exp] 527 / 4e-179 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 520 / 4e-176 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 481 / 2e-161 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 481 / 3e-161 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G088600 [exp] 460 / 8e-154 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G135600 [exp] 450 / 6e-151 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G086200 [exp] 444 / 6e-147 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 436 / 5e-145 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020918 [exp] 798 / 0 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 475 / 1e-158 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 466 / 2e-155 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 460 / 8e-153 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 441 / 3e-147 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002288 [exp] 441 / 4e-147 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030053 [exp] 439 / 6e-145 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033458 [exp] 422 / 8e-143 AT2G29760 221 / 2e-65 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 425 / 2e-140 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 414 / 6e-135 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G217900.2 pacid=42794607 polypeptide=Potri.004G217900.2.p locus=Potri.004G217900 ID=Potri.004G217900.2.v4.1 annot-version=v4.1 ATGAACCAGTTATTGTCTTCTTCAAGAAGCGTAGCCACCGCCACCGCCACCGCCACTTTAATCTATTCTCTCACATTTCAGTCTCTAAAGCAATTCTCAT CGACTACGACAACAAAACCAACCAAATGGAACTCACCAACCAACACCATAATCACTCACCCAATTCTCTTAGCAATGGAATCATGCACTTCAATGCTTCA ATTGAAGCAAATCCAAGCTCACATGACAAAAACCGCTCTCATTAGCCACACTTTCCCAGTTAGTCGTGTCTTAGCCTTTTGCGCTCTCTCTGACTCTGGA GATATAAACCATGCCCATCTCCTGTTTTCCCAGTTACAAAACCCCAATACTTATATTTGGAATACCATGATTAGAGGCTACTCTAAAGCCAAAATGGGCC AAACTGGCTTCTTGTTTTTCTGCCAAATGGTTCAGAAAGGTGTTGAAATGGACTGTAGGAGTTTTGTTTTCGCGCTCAAGGCGTGCGAGCAGTTTTTGGG AGTTTTAGAAGGAAAATCAGTTCATTGTGTTGTTTGGAAGATGGGTTTTGTTTATACTTTGTTGGTTCAGAACGGGTTGGTTCATTTTTATGGTTTGCGT GGTTGTTTGGGTTTAGCACGTCTAGTGTTTGATGAAATCTCTGAAAGAGATGTTGTGTCTTGGACTTCTATGATTGATGGGTATTCTAAGCATAAATGGT GTGATGAGGCCTTGAAACTTTTTGACTCCATGTTAATGTATGGTGTTGTCGAGCCAAATGAGGTTACTATGATTGCAGTTCTTTCATCTTGCTCCCAGAA GGGGGATTTGATATTGGGGAAGACTTTTCTCGAGTATGTAAAAACAAGGAATGTGACTCGTAGCTTAAATCTGATGAATGCAATCTTGGATATGTATGTG AAATGTGGCTGCTTGGATTCTGCTAGAGAGATTTTTGATACCATGGGGGTTAGAGATGTGTTCTCATGGACAAGCATGGTTAACGGGTATGCTAAAAACG GTGAGCTAGAGATGGCGAGAACATTGTTTAATGAGATGCCTGAGAGGAATGCGGTTTCTTGGAATGCCATGATTGCTGGGTATTCTCAAAACAACCAACC TAAGGAAGCTTTAGAATTGTTTCACAACATGTTGGAGGCTGCATTTGTTCCAATGGAGAATACATTAGCTTGTGTGCTCCCTGTTTGTGGTCAATTGGGT TGCCTTGATGTTGGTCAGTGGATCCATCGAAACTACGTCAGAATGAGATACAACGAAATTAGTGTGATCTTAGCAAATGCGCTCATAGACATGTATGCTA AATGCGGAGTCATACATGAAGCTGCAAAAGTTTTTAATGACATGCCAGAGAGAAACCTGGTCTCTTGGAATTCCATGATTACTGCTTATGCTTCTCATGG GCACGCTAAGCAAGCTCTGAGTGTTTTTGAGCGAATGATAAGTGGAGGGTTTAAGCCAGATGATATTACATTGGTGGGTGTCCTGTCAGCTTGCAGTCAT GGTGGCTTAGTTGCCGAAGGTCAAGAGTATTTTCAAAACATGAAACGAAAGTATGGTATAGAACCCAAGAATGAACACTATGCTTGTATGATCGATTTAC TCGGTCGAGTTGGACTCCTAGAAGATGCATACGAGCTAATAACCAAGATGCCAATGGAGCCAAGTGCAGCTGCATGGGGTGCCCTAGTCCATGCTTGTAG GATGCATGGGAATGTTGAAGTAGCTAAGATTGCTGCTCCTAGACTCTTGGAGCTGGACCCTGAAGACAGCGGTATCTATGTTCTGCTAGCTAATATTTGT GCCAGTGGGAGAAGATGGGGTGATGTCAAAATGGCAAGAAGAATGATGAGGGAGAGGAGGGTGAAGAAGATCCCTGGGCGTAGCATTGTCGAAGTTGAGG GCCAGTTTCACGAGTTTTTGGCTGGTGATGAATCACACCCGCAATCTGAAGGCATTTATAACGCATTAGATCAATTATTTGCAATGTCTAAACTAGAGGA CTGTTTTGTAAAATAA
AA sequence Show only first row Show all	>Potri.004G217900.2 pacid=42794607 polypeptide=Potri.004G217900.2.p locus=Potri.004G217900 ID=Potri.004G217900.2.v4.1 annot-version=v4.1 MNQLLSSSRSVATATATATLIYSLTFQSLKQFSSTTTTKPTKWNSPTNTIITHPILLAMESCTSMLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSG DINHAHLLFSQLQNPNTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLEGKSVHCVVWKMGFVYTLLVQNGLVHFYGLR GCLGLARLVFDEISERDVVSWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPNEVTMIAVLSSCSQKGDLILGKTFLEYVKTRNVTRSLNLMNAILDMYV KCGCLDSAREIFDTMGVRDVFSWTSMVNGYAKNGELEMARTLFNEMPERNAVSWNAMIAGYSQNNQPKEALELFHNMLEAAFVPMENTLACVLPVCGQLG CLDVGQWIHRNYVRMRYNEISVILANALIDMYAKCGVIHEAAKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDITLVGVLSACSH GGLVAEGQEYFQNMKRKYGIEPKNEHYACMIDLLGRVGLLEDAYELITKMPMEPSAAAWGALVHACRMHGNVEVAKIAAPRLLELDPEDSGIYVLLANIC ASGRRWGDVKMARRMMRERRVKKIPGRSIVEVEGQFHEFLAGDESHPQSEGIYNALDQLFAMSKLEDCFVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.004G217900 [exp]	0	1
					Potri.018G133300 [exp]	2.23	0.8701
AT4G15010			Mitochondrial substrate carrie...		Potri.001G222400 [exp]	7.41	0.8194
AT4G32910			unknown protein		Potri.018G044300 [exp]	7.74	0.8067
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	9.27	0.8517
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	9.79	0.8464
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Potri.001G267400 [exp]	9.89	0.8138	HF.1
AT4G28200			unknown protein		Potri.007G040000 [exp]	11.61	0.8358
AT3G63090			Ubiquitin carboxyl-terminal hy...		Potri.002G220000 [exp]	12.24	0.7950
					Potri.010G104000 [exp]	13.96	0.7841
AT1G03100			Pentatricopeptide repeat (PPR)...		Potri.005G212400 [exp]	15.62	0.8425

Compare expression of checked genes

Potri.004G217900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.