Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10950 920 / 0 AtTMN1 transmembrane nine 1 (.1) AT1G14670 413 / 8e-138 Endomembrane protein 70 protein family (.1) AT2G01970 409 / 4e-136 Endomembrane protein 70 protein family (.1) AT5G37310 406 / 4e-135 Endomembrane protein 70 protein family (.1) AT1G08350 338 / 2e-108 Endomembrane protein 70 protein family (.1.2) AT2G24170 292 / 2e-90 Endomembrane protein 70 protein family (.1) AT3G13772 285 / 1e-87 AtTMN7 transmembrane nine 7 (.1) AT1G55130 276 / 3e-84 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT5G25100 270 / 3e-82 Endomembrane protein 70 protein family (.1.2) AT5G10840 269 / 1e-81 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G015300 [exp] 986 / 0 AT1G10950 897 / 0.0 transmembrane nine 1 (.1) Potri.017G144181 [exp] 412 / 2e-137 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144241 [exp] 409 / 4e-136 AT5G37310 989 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G075450 [exp] 402 / 1e-133 AT5G37310 953 / 0.0 Endomembrane protein 70 protein family (.1) Potri.012G042300 [exp] 338 / 1e-108 AT1G14670 762 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G203200 [exp] 303 / 3e-95 AT1G08350 671 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.018G018400 [exp] 283 / 6e-87 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G038700 [exp] 277 / 8e-85 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G184200 [exp] 276 / 2e-84 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001291 [exp] 927 / 0 AT1G10950 1000 / 0.0 transmembrane nine 1 (.1) Lus10001368 [exp] 924 / 0 AT1G10950 990 / 0.0 transmembrane nine 1 (.1) Lus10012697 [exp] 870 / 0 AT1G10950 947 / 0.0 transmembrane nine 1 (.1) Lus10015463 [exp] 841 / 0 AT1G10950 910 / 0.0 transmembrane nine 1 (.1) Lus10031308 [exp] 413 / 1e-137 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031876 [exp] 412 / 2e-137 AT2G01970 1059 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042286 [exp] 403 / 7e-134 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026371 [exp] 338 / 6e-107 AT2G01970 912 / 0.0 Endomembrane protein 70 protein family (.1) Lus10004873 [exp] 311 / 4e-98 AT1G08350 668 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10000222 [exp] 285 / 1e-87 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [poplar] [flax] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Potri.004G218300.1 pacid=42794771 polypeptide=Potri.004G218300.1.p locus=Potri.004G218300 ID=Potri.004G218300.1.v4.1 annot-version=v4.1 ATGTCCTCCGCCATTCGATCTCTTCCTCTCATCGCCTTCATTTCCCTCCTCCTCCTCTCTCCCGCTCTCGCCTTCGACGCAGATCACAGGTATGGACAAG AAGAAGCAGTTAAGCTTTGGGTAAACAAAGTGGGTCCTTATAACAATCCACAAGAGACATACAACTATTACAGCCTTCCATTTTGCCATCCATCTAGCAA TGATGGGACACACAAATGGGGTGGCCTTGGCGAGGTCCTTGGTGGAAATGAGCTTATTGATAGCCAGATTGACTTAAAGTTTGCGAAGAATGTGGACAAA GCTGTTATTTGTCAGCTTGAACTTGATGAAGCAAAGGTCAAACAATTCAAGGATGCAATTGAGAACAGTTATTGGTTCGAATTCTTCATTGATGATCTGC CATTATGGGGTTTTGTGGGTGAATTGCGTCCTGATAAGAACAGTGATAATGGAAAGCATCTCCTTTTCACGCATAAGAGCATCACTATCAAATATAATAA AGATCAGATTATTCATGTCAATCTCACACAAGAGAATCCAAAGCCCCTTGAAGCTGGGACAGTGTTGGAGATGACATATTCTGTCAAATGGTCTTTGACT AATGTCAGTTTTGCACGTCGCTTTGATGTTTACTTGGACTACCCCTTCTTTGAGCATCAGATCCATTGGTTTTCCATCTTCAATTCATTCATGATGGTTA TCTTTCTCACCGGTTTAGTGTCAATGATTTTGATGCGGACACTTAGAAATGACTATGCAAAATATGCTCGGGATGATGATGATCTGGTGGAGTCTTTGGA AAGAGATGTTAGTGAGGAGACTGGTTGGAAACTTGTTCATGGGGATGTTTTCCGGCCACCTCGCAGTTTGGTTGTTCTCTCAGCTGTCGTTGGAACAGGT GCTCAGCTAGCGATGCTTGTGCTTCTTGTCATCTTGATGGCAATTGTTGGAACGTTGTATGTCGGGAGAGGAGCAATTGTCACGACTTTCATAGTATGTT ATGCTCTCACATCATTTATTGCTGGTTATGTGAGCGGGGGGCTGTATTCTCGCCATGGAGGTAAAAGTTGGATCAAGTCGATGATTCTCACTGCCTGTCT ATTTCCATGCATGTGCTTTGGCATTGGGTTCATCCTGAACACAATTGCTATATTCTATGGATCTTTAGCTGCAATTCCCTTTGGCACCATGGTGGTTGTT TTTGTAATATGGGCTTTCATCTCCTTCCCTCTGGCCCTTCTTGGCACTGTTGTTGGAAGAAATTGGAGTGGTGCTCCAAACAATCCATGTCGTGTGAAAA CCATTCCCCGTCCAATTCCTGAGAAGAAATGGTACCTCACACCATCTGTGGTCTCAATGATGGGAGGACTTTTGCCCTTTGGCAGCATATTCATTGAGAT GTACTTTGTCTTCACATCCTTCTGGAATTACAAGGTGTACTATGTATACGGCTTTATGCTGCTTGTTTTCCTGATTCTCATTATTGTAACAGTTTGTGTA ACAATAGTGGGGACATATTTCTTGCTTAATGCGGAGAACTATCACTGGCAGTGGACTTCATTCTTCTCTGCTGCCTCAACAGCTGTTTATGTGTACTTGT ACTCAATATATTACTACTCCGTGAAGACTAAGATGTCAGGCTTCTTCCAGACCAGCTTCTATTTTGGATACACTTTGATGTTCTGTCTTGGATTGGGAAT TCTCTGTGGAGCTGTTGGTTATCTAGGCTCCAATTTGTTTGTGAGGAGGATCTATAAGAACATTAAATGCGACTAG
AA sequence Show only first row Show all	>Potri.004G218300.1 pacid=42794771 polypeptide=Potri.004G218300.1.p locus=Potri.004G218300 ID=Potri.004G218300.1.v4.1 annot-version=v4.1 MSSAIRSLPLIAFISLLLLSPALAFDADHRYGQEEAVKLWVNKVGPYNNPQETYNYYSLPFCHPSSNDGTHKWGGLGEVLGGNELIDSQIDLKFAKNVDK AVICQLELDEAKVKQFKDAIENSYWFEFFIDDLPLWGFVGELRPDKNSDNGKHLLFTHKSITIKYNKDQIIHVNLTQENPKPLEAGTVLEMTYSVKWSLT NVSFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYARDDDDLVESLERDVSEETGWKLVHGDVFRPPRSLVVLSAVVGTG AQLAMLVLLVILMAIVGTLYVGRGAIVTTFIVCYALTSFIAGYVSGGLYSRHGGKSWIKSMILTACLFPCMCFGIGFILNTIAIFYGSLAAIPFGTMVVV FVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFLILIIVTVCV TIVGTYFLLNAENYHWQWTSFFSAASTAVYVYLYSIYYYSVKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYKNIKCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.004G218300 [exp]	0	1
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.011G135500 [exp]	1.00	0.9660
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.011G069500 [exp]	2.44	0.9538
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Potri.008G083900 [exp]	2.82	0.9505	GAPDH1.4
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.013G053500 [exp]	3.74	0.9607
AT4G23460			Adaptin family protein (.1)		Potri.003G130400 [exp]	5.47	0.9546
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	7.00	0.9525
AT1G14390			Leucine-rich repeat protein ki...		Potri.001G147700 [exp]	7.34	0.9342
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036732 [exp]	7.74	0.9495
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.001G149200 [exp]	8.06	0.9435
AT5G43420			RING/U-box superfamily protein...		Potri.010G072700 [exp]	8.48	0.9304

Compare expression of checked genes

Potri.004G218300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.