Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20020 187 / 6e-53 unknown protein AT5G44780 139 / 5e-34 unknown protein AT1G11430 107 / 4e-26 plastid developmental protein DAG, putative (.1) AT3G06790 86 / 1e-18 plastid developmental protein DAG, putative (.1.2) AT1G32580 73 / 3e-14 plastid developmental protein DAG, putative (.1) AT2G33430 72 / 4e-14 DAL1, DAL differentiation and greening-like 1 (.1) AT2G35240 69 / 7e-13 plastid developmental protein DAG, putative (.1) AT3G15000 62 / 7e-10 cobalt ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G218800 [exp] 530 / 9e-180 AT4G20020 182 / 8e-51 unknown protein Potri.003G015100 [exp] 379 / 7e-125 AT4G20020 239 / 2e-74 unknown protein Potri.011G032900 [exp] 107 / 5e-26 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.010G007200 [exp] 97 / 4e-22 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.008G169900 [exp] 68 / 2e-12 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.010G068300 [exp] 66 / 1e-11 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.011G112200 [exp] 66 / 4e-11 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.001G393400 [exp] 63 / 3e-10 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.008G022200 [exp] 44 / 0.0003 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035806 [exp] 244 / 4e-74 AT4G20020 278 / 4e-90 unknown protein Lus10036589 [exp] 221 / 1e-65 AT4G20020 271 / 1e-87 unknown protein Lus10037713 [exp] 209 / 8e-61 AT4G20020 261 / 9e-84 unknown protein Lus10018398 [exp] 108 / 7e-27 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10007615 [exp] 107 / 5e-26 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10016825 [exp] 91 / 4e-20 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10011789 [exp] 66 / 8e-12 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10023744 [exp] 66 / 1e-11 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10043130 [exp] 67 / 3e-11 AT3G15000 284 / 6e-92 cobalt ion binding (.1) Lus10014696 [exp] 63 / 4e-10 AT3G15000 291 / 1e-95 cobalt ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G218650.5 pacid=42795899 polypeptide=Potri.004G218650.5.p locus=Potri.004G218650 ID=Potri.004G218650.5.v4.1 annot-version=v4.1 ATGGCGCAACGACTGCTCCGCCTCCGTCGAGCCCTAACCCCATTCTCTTCTACTCGGCAACGCCCTCCTCTCTCCACTCCTATCGCAATCGCACCACCAG CCGCACAGACGCCCCCAATCATTTCTCAATGGCGGGGATTCTCGGGAACGAGAGTGTCAATGATGTCGACGACTGGTTTAGCAGAGAAACAGTACAAGGT ATACGAGGATGGAGAAGAAATCGTTAAGAACACAATTCTGTTCGAAGGCAACGAATACATTCACTGGCTGGTGACTGTTGATTTCCCAAAAGAACCCAAA CCCTCTCCTGAAGAAATGGTCGCTGCTTTTGAACGCATCTGTGCCCAGGGACTCAACATCAGTATTGAGGAGGCGAAGAAGAGAATGTATGCTTGTAGCA CAACTATTTATCAAGGGTTTCAGGTTTCAATTACGCACCAAGAGGCCGAAAAGTTTAGAGGTGTTCCGGGGGCTGTTTTTGTATCACCAGATTCGCGAGT AAAAAAGGAAAATGGAGGAGACAAGTATAAAAATGCAGTAATCACTCCGAGACCACCCCCAGTTCAATTTCAGAGAGGTGGAGAAAGGCGCCGTGATCCA GGCAGAATTCCACCTAGATTTGACCAGCCTGAAAGTCCAATTCCAAATCATCAAGGGCCGCAACCCCAGTATAGTCAGCAAGGGCATATGCAAGGAGGTG GTAGTAACTACGGGTCTCAACAAAATCGTCCACCACAGAAAAATCATGGTCCTCCAGGGCTAGGAGGAACAGTGCCGATGAACAATAGGGATTATGCCAC TGGAGGAAGGAACACATATCCAGGACAGCAAGGAAATCACGATCCCCCAGGACAGCAAGGTTACAACCAAGGACAGCAGGGGAATCATTATGACCCAGAC CAAAGGAGCTTTCCACAAGGAGATTGGAGGAGGGATCATGGATCTCCTGGGCAAAGAGATTATAGGGGAGACAACTGGAATTATTCTCCCACCCATGGTG GAAACTATGGGCAAGGTGGAAATACTAGCTATGGACAACGTCACCCAGGTGAAGGTCAGAGGTCCGCACAAATGGAGCTGAGGGGCATGCAAGGAGAGCA AGGGAACTATGCACCAATGGGACAACCAGGGTGGTCAAACCAATACAGTCAACAAGGGCACATGCAAGGAGGTGGTAGTTGCTACGGGTCTCCACAAAAT GGTCCATCACAGCAAGATCATGGTCCTCCAGTGCTAGGAGGAAGGATGCCAATGAACAATAGGGATTATGCCCCTGGAGGAAGGAACATGTATCCAGGAC AGCAAGGTTACTTCCAAGGACAGCAGGGAAATCATTACCCCCCAGGACAGCAAGGTTACAACCAAGGACAGCATGGAAATCGTTATTCCCCAGGTCAGCA AGGTTACAACCAAGAACAGCAGGGAAATCATTACCCCCCAGGACAGCAAGGTTACAACCCAGGACAGCATGGAAATCGTTATCCCCCAGGTCAGCAAGGT TACAACCAAGGACAGCAGGGAAATCTTTACCCCCCGGGACATCAAGGTTACTTCCAAGAACAGCAGGGAAATCATTACCCCCCAGGACAGCAAGGTTACT TCCAAGAACAGCAGGGAAATCGATACCCCCCAGGACAGCAAGGTTACAACCAAGGACAGCAGGGAAGTCATTACCGCCCAGGACAGCAAGGTTACAACCA AGGACAGCAGGGGAATCATTATGACCCAGACCAAAGGAGCTTTCCACAAGGAGATTGGAGGAGGGATCATGGATCTCCTGGGCAAAGAGATGATAGGGGA GACAACTGGAATTATTCTCCCACCCATGGTGGAAACTATGGGCAAGGTGGAAATACTAGCTATGGACAACGTCACCCAGGTGAAGGTCAGAGGTCCGTGC AAATGGAGCAGAGGAGCATGCAAACAGAGCAAGGGAACTCTGCACCATTGGGACAACCAGGGTGGTCAAACCAACATGGGAAAGATTCCTGGTGTCAACT TACAGAGACTGCAAGCTCTGCCTAA
AA sequence Show only first row Show all	>Potri.004G218650.5 pacid=42795899 polypeptide=Potri.004G218650.5.p locus=Potri.004G218650 ID=Potri.004G218650.5.v4.1 annot-version=v4.1 MAQRLLRLRRALTPFSSTRQRPPLSTPIAIAPPAAQTPPIISQWRGFSGTRVSMMSTTGLAEKQYKVYEDGEEIVKNTILFEGNEYIHWLVTVDFPKEPK PSPEEMVAAFERICAQGLNISIEEAKKRMYACSTTIYQGFQVSITHQEAEKFRGVPGAVFVSPDSRVKKENGGDKYKNAVITPRPPPVQFQRGGERRRDP GRIPPRFDQPESPIPNHQGPQPQYSQQGHMQGGGSNYGSQQNRPPQKNHGPPGLGGTVPMNNRDYATGGRNTYPGQQGNHDPPGQQGYNQGQQGNHYDPD QRSFPQGDWRRDHGSPGQRDYRGDNWNYSPTHGGNYGQGGNTSYGQRHPGEGQRSAQMELRGMQGEQGNYAPMGQPGWSNQYSQQGHMQGGGSCYGSPQN GPSQQDHGPPVLGGRMPMNNRDYAPGGRNMYPGQQGYFQGQQGNHYPPGQQGYNQGQHGNRYSPGQQGYNQEQQGNHYPPGQQGYNPGQHGNRYPPGQQG YNQGQQGNLYPPGHQGYFQEQQGNHYPPGQQGYFQEQQGNRYPPGQQGYNQGQQGSHYRPGQQGYNQGQQGNHYDPDQRSFPQGDWRRDHGSPGQRDDRG DNWNYSPTHGGNYGQGGNTSYGQRHPGEGQRSVQMEQRSMQTEQGNSAPLGQPGWSNQHGKDSWCQLTETASSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20020			unknown protein		Potri.004G218650 [exp]	0	1
AT5G06810			Mitochondrial transcription te...		Potri.016G048200 [exp]	2.44	0.8727
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.014G052800 [exp]	4.00	0.8738
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Potri.001G164100 [exp]	4.58	0.8449
AT1G27090			glycine-rich protein (.1)		Potri.008G194200 [exp]	4.58	0.8099
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Potri.015G048200 [exp]	4.89	0.8293
AT5G40480		EMB3012	embryo defective 3012 (.1)		Potri.001G345100 [exp]	6.00	0.8386
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Potri.008G072300 [exp]	7.61	0.7602
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	8.00	0.8703
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.015G053100 [exp]	8.66	0.7974	Pt-ARP4.1
AT1G13810			Restriction endonuclease, type...		Potri.008G039800 [exp]	8.94	0.8419

Compare expression of checked genes

Potri.004G218650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.