Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20020 183 / 9e-51 unknown protein AT5G44780 133 / 3e-32 unknown protein AT1G11430 97 / 2e-22 plastid developmental protein DAG, putative (.1) AT3G06790 82 / 5e-17 plastid developmental protein DAG, putative (.1.2) AT2G33430 71 / 1e-13 DAL1, DAL differentiation and greening-like 1 (.1) AT3G15000 69 / 4e-12 cobalt ion binding (.1) AT1G32580 65 / 1e-11 plastid developmental protein DAG, putative (.1) AT2G35240 63 / 7e-11 plastid developmental protein DAG, putative (.1) AT1G72530 57 / 6e-09 plastid developmental protein DAG, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G218650 [exp] 482 / 3e-161 AT4G20020 187 / 5e-53 unknown protein Potri.003G015100 [exp] 304 / 2e-95 AT4G20020 239 / 2e-74 unknown protein Potri.010G007200 [exp] 97 / 3e-22 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.011G032900 [exp] 91 / 4e-20 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.011G112200 [exp] 73 / 2e-13 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.001G393400 [exp] 71 / 1e-12 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.008G169900 [exp] 62 / 2e-10 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.010G068300 [exp] 61 / 6e-10 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037713 [exp] 198 / 2e-56 AT4G20020 261 / 9e-84 unknown protein Lus10036589 [exp] 196 / 1e-55 AT4G20020 271 / 1e-87 unknown protein Lus10035806 [exp] 195 / 3e-55 AT4G20020 278 / 4e-90 unknown protein Lus10018398 [exp] 96 / 1e-22 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10007615 [exp] 97 / 2e-22 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10016825 [exp] 92 / 2e-20 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10043130 [exp] 74 / 1e-13 AT3G15000 284 / 6e-92 cobalt ion binding (.1) Lus10032618 [exp] 69 / 3e-12 AT3G15000 301 / 2e-99 cobalt ion binding (.1) Lus10014696 [exp] 69 / 3e-12 AT3G15000 291 / 1e-95 cobalt ion binding (.1) Lus10011789 [exp] 64 / 7e-11 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G218800.3 pacid=42796193 polypeptide=Potri.004G218800.3.p locus=Potri.004G218800 ID=Potri.004G218800.3.v4.1 annot-version=v4.1 ATGGCGCAACGACTACTCCGCCTCCGTCGAACCCTAACCCCTCTCTCTTCAACTCGGCAACGGAGCCCCTCTCTCCCCGCCCCTATGGCAATCGCACCAC CTGCCGCACAGACGCCCCCAATCATTTCTCAATGGCGGGGATTCTCGGGAAAGAGAGTGTCGATGACGTCGACGGCTGCAATAGCAGAGAAACAGTACTG GGTATACGAGAATTTAGGCGAAATCACTGAGAACAAAACTCTGTTCGAAGGCTGCGCTTACAATTACTGGCTGGTGACTGTTGATTTCCCCAAAGAAGAA CCCAAACCCTCGCCTCGAGAAATGATCGCTGCTTATGAACGCATCTGTGCCCAGGGACTCAACAGCAGTATTGAGGAGGCGAAGAAGAGAATATATGCTT GTAGCACAACTACTTTTCAAGGGTTTCAGGTTTTGATGACGGAACAAGAGTCCGAAAAGTTTAGAGACGTTCCGAGGGTTGTTTTTGTATTACCAGATTC TCCCGGAAACAAGGAATATGAAGGAGACGAGTATGAACATAGAATGATCACTCCGGGACCAACCACAGTTCAATTTCAGAGAGGGGGAGAAAGATGCCGT GACCAGGGTAGAATTCCACCTAGATTTGACCAGCGAGATAGTCCAATTCCAAATAATCAAGGGCTGCAACCCCAGAATAGTCAGCAAGGACGAATGCCAG GAGGTGGTGGTAACTACGGGTCTCAACAAAATGGTCCACCACAGCAAAATCATGGTCCTCCAGGGCCAGGAGGAAGGATGCCGATGAACAATAGGGATTA TGCCCCTGGAGGAAGGAACATGTATCCAGGACAAGAAGGAAATCATGATCCCCCAGGACAGCAAGGTTACAACCATGGACAGCAGCGAAATCATTACCCC CCAGGAGGTGGTGGAAATCATGACCCCCCAGGACAGCAAGGTTACAACCATGGACAGCAGCGAAATCATTACCCCCAAGGACAAGGTTACAACCAAGGAC AGCAGGGAAATCATTATGCCCCAGACCAAAGGAGCTTTCCACAAGGAGATTGGAGGGATCATGGACCTCCTGGGCAAAGAGATTATAAGGGAGACAACTG GAATTATTCTCCCACCCATGGTGGAAACTATGGGCAAGGTGGAATTCCACCAAGATTTGACCAGCGAGAAAGTCCAATTCCAAATTATCACGGGCTGCAA CCCCAGTATAGTCAGCAAGGGTGTATGCAAGGAGGTGGTAGTGCAGCCCAGTATAGTCAGCAAGGGTGTATGCACGGAGGTGGTAGTAACTACGGATCTC AACAAAATGGTTCACCACAGCAAAATCATGGTCCTCCAGGGCTAGGAGGAAGGATGCTGATGAACAATAGGGATTATGCCCCTGGAGGAAGGAACATGTA TCCAGGACAGCAAGGAAATCATGATCCCCCAGGACAGCAAGGTTACAACGAAGGAGAGCAAGTAGGTGGTAGTAACTACAGGTCTCAACAAAATGGTCCA CCACAGCAAAATCATGGTCCTCCAGGGCTAGGAGGAAGGATGCTGATGAACAATAGGGATTATGCCCCTGGAGGAAGGAACATGTATCCAGGACAGCAAG GAAATCATGATCCCCCAGGACAGCAAGGTTACAACGAAGGAGAGCAAGTAGGTGGTAGTAACTACAGGTCTCAACAAAATGGTCCACCACAGCAAAATCA TGGTCCTCCAGGGCGAGGAAGGATGCCGATGAACAATAGGGATCATGCCCCTGGGGAAAGGAACACATATCCAGGACAGCACGGAAATCGTGATCCCCCA GGACAACAAGGTTACAACCAAGGAGAGCAGAGAAGTCATTACCCCCCAGGACAGCAAGGGTACAACCCAGAACAGCAGGGAAATCATTATCCCCCAGGAC AAGGTTATAACCAAGGACGGCAGGGAAATCATTACCCCCCAGGACAGCAAGGTTACTTCCAAAGACAGCAGGGAAATCATTATGACCCAGACCAAAGGAG CTTTACACAAGGAGATAGGAGGGATCATGAATCTCCTGGTCAAAGAGATTACAGGGGAGACAACCGGAATTATTCTCCCACCCATGGTGGTAACTATGGG CAAGGTGGAAATAGTAGCTATGGACAACGTAACCCAGGTGAATGTCAGAGGTCTGCACAAATGGAGCAGATGGGCATGCAAGGAGAGCAAGGGAACTATG CACCATTGGGACCACCAGGGTGGTCAAACCAAGTAAGGCACACCCCCCATTAA
AA sequence Show only first row Show all	>Potri.004G218800.3 pacid=42796193 polypeptide=Potri.004G218800.3.p locus=Potri.004G218800 ID=Potri.004G218800.3.v4.1 annot-version=v4.1 MAQRLLRLRRTLTPLSSTRQRSPSLPAPMAIAPPAAQTPPIISQWRGFSGKRVSMTSTAAIAEKQYWVYENLGEITENKTLFEGCAYNYWLVTVDFPKEE PKPSPREMIAAYERICAQGLNSSIEEAKKRIYACSTTTFQGFQVLMTEQESEKFRDVPRVVFVLPDSPGNKEYEGDEYEHRMITPGPTTVQFQRGGERCR DQGRIPPRFDQRDSPIPNNQGLQPQNSQQGRMPGGGGNYGSQQNGPPQQNHGPPGPGGRMPMNNRDYAPGGRNMYPGQEGNHDPPGQQGYNHGQQRNHYP PGGGGNHDPPGQQGYNHGQQRNHYPQGQGYNQGQQGNHYAPDQRSFPQGDWRDHGPPGQRDYKGDNWNYSPTHGGNYGQGGIPPRFDQRESPIPNYHGLQ PQYSQQGCMQGGGSAAQYSQQGCMHGGGSNYGSQQNGSPQQNHGPPGLGGRMLMNNRDYAPGGRNMYPGQQGNHDPPGQQGYNEGEQVGGSNYRSQQNGP PQQNHGPPGLGGRMLMNNRDYAPGGRNMYPGQQGNHDPPGQQGYNEGEQVGGSNYRSQQNGPPQQNHGPPGRGRMPMNNRDHAPGERNTYPGQHGNRDPP GQQGYNQGEQRSHYPPGQQGYNPEQQGNHYPPGQGYNQGRQGNHYPPGQQGYFQRQQGNHYDPDQRSFTQGDRRDHESPGQRDYRGDNRNYSPTHGGNYG QGGNSSYGQRNPGECQRSAQMEQMGMQGEQGNYAPLGPPGWSNQVRHTPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20020			unknown protein		Potri.004G218800 [exp]	0	1
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	2.64	0.9186
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.004G090200 [exp]	3.46	0.8955
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Potri.008G073001 [exp]	3.74	0.8869
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.012G088500 [exp]	3.74	0.8704
					Potri.009G112922 [exp]	4.69	0.8717
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Potri.010G172500 [exp]	6.32	0.8579
AT5G61800			Pentatricopeptide repeat (PPR)...		Potri.012G110800 [exp]	6.63	0.8914
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Potri.017G084900 [exp]	7.41	0.8895
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	8.94	0.8837
AT1G05910			cell division cycle protein 48...		Potri.017G030900 [exp]	10.48	0.8578	BRD911

Compare expression of checked genes

Potri.004G218800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.