Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11850 201 / 3e-61 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11840 197 / 1e-59 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11830 196 / 2e-59 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT2G42010 188 / 3e-56 PLDBETA1 phospholipase D beta 1 (.1) AT4G35790 184 / 6e-55 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT4G00240 183 / 2e-54 PLDBETA2 phospholipase D beta 2 (.1) AT3G15730 144 / 5e-41 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 138 / 8e-39 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 131 / 4e-36 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 92 / 1e-22 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G015000 [exp] 252 / 3e-80 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 192 / 5e-58 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 191 / 1e-57 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G112100 [exp] 191 / 1e-57 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.005G105600 [exp] 188 / 2e-56 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G152100 [exp] 187 / 1e-55 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.014G074700 [exp] 185 / 4e-55 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.007G060300 [exp] 177 / 1e-52 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.006G253900 [exp] 140 / 3e-39 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001293 [exp] 224 / 1e-69 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 224 / 2e-69 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10004156 [exp] 197 / 1e-59 AT4G35790 1079 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10005627 [exp] 194 / 5e-59 AT4G35790 969 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10006819 [exp] 189 / 1e-56 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 184 / 1e-54 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10028401 [exp] 172 / 3e-51 AT4G35790 1050 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10014146 [exp] 174 / 4e-51 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10042282 [exp] 171 / 1e-50 AT2G42010 940 / 0.0 phospholipase D beta 1 (.1) Lus10041855 [exp] 170 / 6e-50 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12357 [poplar] [flax] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Potri.004G218900.1 pacid=42795815 polypeptide=Potri.004G218900.1.p locus=Potri.004G218900 ID=Potri.004G218900.1.v4.1 annot-version=v4.1 ATGGTCATGGGATCAGCAAACGTTAACAAGATATCCTTGGATGGTTCAAGGGATACAGAAATTGCTATGGGGGCTTACCAACCAACATACACATGGGCAA GAAAAAGTTCTCGTCCACATGGACAGGTATATGGTTACCGGATGTCTCTTTGGGCAGAGCATCTAGGCAACCTCGAGGAAGCTTTCGGCGAGCCTCAACA CCTTGAATGCATGAAACGAGTGAGAAAGATTTCCAGACACAACTGGAAAGCATATGTTTCCGAGGAGGGTAAAGAAATGAGAGGACACTTGCTACAATAT CCAATTCAAGTGAGCAGAAGTGGAAAAGTGAGCGCATTGCCAGGTCATGAAACATTTCCTGATGTTGGTGGCAAAGTTCTTGGATCACCCACCACCCTTC CTGATGTTCTAACAACGTAA
AA sequence Show only first row Show all	>Potri.004G218900.1 pacid=42795815 polypeptide=Potri.004G218900.1.p locus=Potri.004G218900 ID=Potri.004G218900.1.v4.1 annot-version=v4.1 MVMGSANVNKISLDGSRDTEIAMGAYQPTYTWARKSSRPHGQVYGYRMSLWAEHLGNLEEAFGEPQHLECMKRVRKISRHNWKAYVSEEGKEMRGHLLQY PIQVSRSGKVSALPGHETFPDVGGKVLGSPTTLPDVLTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11850		PLDGAMMA1, MEE5...	maternal effect embryo arrest ...		Potri.004G218900 [exp]	0	1
					Potri.018G094050 [exp]	4.00	0.9172
AT5G05800			unknown protein		Potri.010G045701 [exp]	14.49	0.9245
					Potri.019G014330 [exp]	14.56	0.9255
					Potri.005G031948 [exp]	16.73	0.9245
					Potri.011G155001 [exp]	17.74	0.7878
					Potri.003G073450 [exp]	18.33	0.9190
					Potri.002G132850 [exp]	20.49	0.9208
					Potri.004G075950 [exp]	28.14	0.9126
					Potri.008G069050 [exp]	29.49	0.9187
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.001G308050 [exp]	30.46	0.8877

Compare expression of checked genes

Potri.004G218900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.