Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58110 302 / 1e-100 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT4G06598 238 / 4e-76 unknown protein AT1G35490 132 / 7e-36 bZIP bZIP family transcription factor (.1) AT2G42380 90 / 4e-20 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT3G58120 89 / 7e-20 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G04840 69 / 5e-13 bZIP bZIP protein (.1) AT1G06070 61 / 3e-10 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G43700 57 / 5e-09 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G014800 [exp] 512 / 0 AT1G58110 304 / 3e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.015G147800 [exp] 138 / 2e-37 AT1G58110 153 / 4e-43 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.001G374200 [exp] 88 / 2e-19 AT3G58120 282 / 6e-94 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.019G091900 [exp] 87 / 6e-19 AT3G58120 285 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 86 / 1e-18 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G242800 [exp] 74 / 1e-14 AT5G04840 228 / 2e-73 bZIP protein (.1) Potri.008G018400 [exp] 69 / 6e-13 AT5G04840 222 / 3e-71 bZIP protein (.1) Potri.009G074900 [exp] 63 / 3e-11 AT2G42380 87 / 3e-20 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.017G027400 [exp] 63 / 1e-10 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015457 [exp] 387 / 5e-134 AT1G58110 315 / 2e-105 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10002185 [exp] 91 / 1e-20 AT3G58120 219 / 1e-71 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10039902 [exp] 90 / 1e-20 AT3G58120 181 / 8e-56 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10017656 [exp] 91 / 2e-20 AT2G42380 305 / 1e-103 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10033630 [exp] 91 / 3e-20 AT2G42380 294 / 7e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10018899 [exp] 64 / 6e-11 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10028595 [exp] 64 / 6e-11 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10030531 [exp] 57 / 2e-08 AT2G40620 286 / 4e-93 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008150 [exp] 55 / 2e-08 AT1G06070 346 / 4e-119 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10029773 [exp] 55 / 3e-08 AT1G43700 311 / 6e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G219100.1 pacid=42794501 polypeptide=Potri.004G219100.1.p locus=Potri.004G219100 ID=Potri.004G219100.1.v4.1 annot-version=v4.1 ATGGCAAACTCCAAGGGGTCAGCAAACATAAGAAATTTCATGTACTCTGGAAAACATGCATTACTTCCTCCAAAAAGTCCTTTTCCTATTGTTTCTCCAT CATATGTTGATTATGTTCCCAGCAGCAGTATTGGATCAAAAACTGTTCAAAAGCCTAGAGAGGGAAACACACACCATCAGCGAACTTCCTCTGAGATGCT CTTCATAGAGGATCAGCCTTCATGGCTTGATGATCTTCTTAATGAGCCAGAGACACCTGTCCGTAGAGGAGGTCATAGGCGTTCATCAAGTGACTCTTTT GCGTACATAGATGCAGCTAATGCTTCTAACATGGATTATGCAGCACAGGATGGGTGCAGATATAAAAATGTGATATCTATACCTTCTTGGGGATCTCAAG ACTTTGATTATTACAAAGATGTTAGGCGAACTCCTCTCTATGCTGAAATGAACATGTCGAAACAGAAGAATAGGGCTTGGGATTCATCTTTAAATGCCCA AACGTACCCAAGCAGTCTTTCCTCTCCCAGGGAGAATGCTGGTCTGCAGAGTTCAGGATCATCATGTGCTCCCCGGGAAGCAGATAGTGTTTCAGAGAGT GAAAAGCAAGATCCACTCGATGGTTCACATGATTCAAAAATCTCATCTGAGAAGGACAGCTCAAATTCCAAGTCTTCTGCATCAGAGACTGATACAAAAC GTGCTAAACAGCAATTTGCTCAGCGCTCCAGAGTCCGGAAACTTCAGTACATAGCTGATCTGGAAAGAAATGTACAAGCTTTGCAGGCAGAAGGATCTGA AGTCTCAGCCGAGCTTGAATTTGTCAATCAGCAAAATCTTATTCTAAGCATGGAGAACAAAGCTCTTAAGCAACGGTTTGAAAATTTGGCCCATGAGCAG CTTATCAAATGCTTGGAGCACGAAGTTCTGGAGAGGGAGATTGGAAGGCTACGAGCCTTATATCAGCAGCAGCAGCAGCAGCAACCTGCTTCAAATCATC GCCGTAGTAAAAGCAAGGACTTGGATTCCCAATTTGCAAACCTCTCTTTGAAACATAAGGATGCCAATTCTAGCCGAGACCCTGTGACTGGTTCACTCCG CATTTAG
AA sequence Show only first row Show all	>Potri.004G219100.1 pacid=42794501 polypeptide=Potri.004G219100.1.p locus=Potri.004G219100 ID=Potri.004G219100.1.v4.1 annot-version=v4.1 MANSKGSANIRNFMYSGKHALLPPKSPFPIVSPSYVDYVPSSSIGSKTVQKPREGNTHHQRTSSEMLFIEDQPSWLDDLLNEPETPVRRGGHRRSSSDSF AYIDAANASNMDYAAQDGCRYKNVISIPSWGSQDFDYYKDVRRTPLYAEMNMSKQKNRAWDSSLNAQTYPSSLSSPRENAGLQSSGSSCAPREADSVSES EKQDPLDGSHDSKISSEKDSSNSKSSASETDTKRAKQQFAQRSRVRKLQYIADLERNVQALQAEGSEVSAELEFVNQQNLILSMENKALKQRFENLAHEQ LIKCLEHEVLEREIGRLRALYQQQQQQQPASNHRRSKSKDLDSQFANLSLKHKDANSSRDPVTGSLRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.004G219100 [exp]	0	1
AT1G04850			ubiquitin-associated (UBA)/TS-...		Potri.001G316400 [exp]	1.00	0.9143
AT3G05000			Transport protein particle (TR...		Potri.005G044300 [exp]	6.24	0.8249
					Potri.016G091300 [exp]	6.92	0.8824
AT4G30600			signal recognition particle re...		Potri.006G183600 [exp]	7.07	0.8783
AT5G52280			Myosin heavy chain-related pro...		Potri.015G143800 [exp]	7.93	0.8729
AT3G05545			RING/U-box superfamily protein...		Potri.005G024700 [exp]	8.77	0.8643
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.008G214100 [exp]	9.69	0.8118
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Potri.010G247900 [exp]	10.24	0.8539
AT5G03110			unknown protein		Potri.016G086900 [exp]	10.39	0.8787
AT3G03210			unknown protein		Potri.017G139800 [exp]	12.08	0.8828

Compare expression of checked genes

Potri.004G219100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.