Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G06599 542 / 0 ubiquitin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G011300 [exp] 582 / 0 AT4G06599 503 / 1e-180 ubiquitin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001294 [exp] 582 / 0 AT4G06599 550 / 0.0 ubiquitin family protein (.1) Lus10012700 [exp] 559 / 0 AT4G06599 551 / 0.0 ubiquitin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.004G219300.2 pacid=42794578 polypeptide=Potri.004G219300.2.p locus=Potri.004G219300 ID=Potri.004G219300.2.v4.1 annot-version=v4.1 ATGGCTGCTTCAGCTTCTGCTTCTGCTTCACTAACCTCGTCGGCGACAGAAGATGAGATAACACTGACAGTCAAATGGAGCGGAAAGGATTACACTGTCC GAGTCTGCGGCAACGATTCAGTAGCCGAGTTGAAGCGCAGTATCTGCGAACTCACCAACGTTTTGCCGAAGAGACAAAAGCTTCTTTACCCCAAAATTGG TAACAAACTCGCCGATGAATCAGTTTTGCTCTCTCAATTACCTATCAAATCCTCTCTCAAGATGACCATGATCGGAACTGTTGAAGATGATATTATCGTG GATCAAGTGGACTCTCCAGAGATTGTTGATGATTTTGAACTTGGGCAAGATGAAGCTGTTGATATTAAAGATAAGGAAGTCAATAAGCAGAAACTGAGGA AGCGTATAGATCAATTCAAGATTGAACTTAAAAATCCATGTCGTCCAGGAAAGAAACTGCTTGTTCTGGATATTGACTATACACTGTTTGATCACCGATC CACAGCAGAGAATCCACTTGAACTCATGCGGCCATATCTTCATGAGTTTCTCACTGCCGTTTATGCAGAATATGACATAATGATATGGTCTGCAACCAGC ATGAAGTGGGTTGAATTGAAGATGGGACAACTTGGGGTCCTCAACAATCCTAACTACAAAATAACAGCTCTTTTAGACCACTTAGCAATGATTACAGTTC AATCAGACTCTCGTGGGATCTTTGACTGCAAGCCGCTTGGATTGATTTGGGCTAAATTCCCAGAGTTTTACAGTTCAAAAAACACTATAATGTTTGACGA TCTGCGAAGAAATTTCGTGATGAACCCAAGAAATGGTTTGGTAATCAAGCCATTCAGGAAGGCTCATGCTAACCGAGATAATGATCAGGAGCTTGTGAAG CTCACACAATACTTGCTTGCCATTGCAGAGCTTGATGATTTAAGTGTCCTGGATCATAAAAACTGGGAGTTCTTTGCTGAGGGCAATGCTAAAAACCGTA GGCGTACCTGA
AA sequence Show only first row Show all	>Potri.004G219300.2 pacid=42794578 polypeptide=Potri.004G219300.2.p locus=Potri.004G219300 ID=Potri.004G219300.2.v4.1 annot-version=v4.1 MAASASASASLTSSATEDEITLTVKWSGKDYTVRVCGNDSVAELKRSICELTNVLPKRQKLLYPKIGNKLADESVLLSQLPIKSSLKMTMIGTVEDDIIV DQVDSPEIVDDFELGQDEAVDIKDKEVNKQKLRKRIDQFKIELKNPCRPGKKLLVLDIDYTLFDHRSTAENPLELMRPYLHEFLTAVYAEYDIMIWSATS MKWVELKMGQLGVLNNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWAKFPEFYSSKNTIMFDDLRRNFVMNPRNGLVIKPFRKAHANRDNDQELVK LTQYLLAIAELDDLSVLDHKNWEFFAEGNAKNRRRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G06599			ubiquitin family protein (.1)		Potri.004G219300 [exp]	0	1
AT2G30000			PHF5-like protein (.1)		Potri.001G277800 [exp]	1.00	0.8517
AT3G14250			RING/U-box superfamily protein...		Potri.001G037200 [exp]	2.44	0.8006
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.002G205400 [exp]	4.69	0.8007
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.008G043000 [exp]	6.92	0.7539
AT1G14780			MAC/Perforin domain-containing...		Potri.002G234700 [exp]	7.74	0.7365
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.002G123000 [exp]	8.48	0.7719	Pt-CYCD1.3
AT1G27300			unknown protein		Potri.003G170700 [exp]	8.48	0.7504
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.010G154300 [exp]	10.19	0.7347
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.002G133700 [exp]	12.32	0.7189	BES1.2
AT5G53900			Serine/threonine-protein kinas...		Potri.011G116400 [exp]	13.26	0.7381

Compare expression of checked genes

Potri.004G219300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.