Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13260 42 / 4e-05 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT2G36080 37 / 0.0008 B3 ABS2, NGAL1 AP2/B3-like transcriptional factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G219900 [exp] 222 / 2e-76 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.004G219800 [exp] 197 / 8e-67 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.004G219450 [exp] 129 / 8e-40 AT1G13260 45 / 4e-06 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Potri.004G220100 [exp] 119 / 4e-36 AT1G35520 44 / 6e-06 auxin response factor 15 (.1) Potri.003G011132 [exp] 117 / 7e-35 AT1G68840 44 / 7e-06 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Potri.003G011066 [exp] 115 / 4e-34 AT1G35240 43 / 2e-05 auxin response factor 20 (.1) Potri.003G010700 [exp] 112 / 7e-33 AT1G68840 55 / 1e-09 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Potri.003G013026 [exp] 83 / 2e-21 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.003G013601 [exp] 81 / 2e-20 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021707 [exp] 42 / 3e-05 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G219700.1 pacid=42794556 polypeptide=Potri.004G219700.1.p locus=Potri.004G219700 ID=Potri.004G219700.1.v4.1 annot-version=v4.1 ATGTATCCGAGGCTGATCTTCACAAAGATACTATCACAGACGGATGTTAAACATAGGATGACCATTCCAATGAAGAGCTTCAATGTTGTTTTCCAAATCC CTCAGGGAAAACACTACAAACGATTTGTTTTTATTGACATGATCGATACTGGTCGCCCCTGGAGCTTCCGATGTTCCACAAGGAAGAAAGATGTCTACCG CAAACCAGTCTTCTCATCAGGCTGGATTAAGTACGTCAGACGAAAGGGTCTCAGAGAAGGCGATCAAGTCAGCTTCTTTTTGGTGCAGAAAGATGGAGAG GAGGGTCTGCGATTCGGAGTTCAAGCACAGAAAAAACTGATCAGGTTATTGGGTAAAGATTGTTGGGATACTGTTTGA
AA sequence Show only first row Show all	>Potri.004G219700.1 pacid=42794556 polypeptide=Potri.004G219700.1.p locus=Potri.004G219700 ID=Potri.004G219700.1.v4.1 annot-version=v4.1 MYPRLIFTKILSQTDVKHRMTIPMKSFNVVFQIPQGKHYKRFVFIDMIDTGRPWSFRCSTRKKDVYRKPVFSSGWIKYVRRKGLREGDQVSFFLVQKDGE EGLRFGVQAQKKLIRLLGKDCWDTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.004G219700 [exp]	0	1
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219800 [exp]	1.00	0.9938
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G086000 [exp]	3.00	0.9306
AT1G20225			Thioredoxin superfamily protei...		Potri.002G017500 [exp]	5.47	0.8939
AT3G59850			Pectin lyase-like superfamily ...		Potri.017G004500 [exp]	6.63	0.8753
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.017G113700 [exp]	9.05	0.8508
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	9.16	0.8900
AT3G03720		CAT4	cationic amino acid transporte...		Potri.019G039600 [exp]	9.27	0.8505
AT3G52600		ATCWINV2	cell wall invertase 2 (.1.2)		Potri.006G210600 [exp]	10.67	0.9215	BFRUCT1.1
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.008G141100 [exp]	14.24	0.9178
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073091 [exp]	17.23	0.9015

Compare expression of checked genes

Potri.004G219700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.