Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01500 47 / 7e-07 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT1G13260 46 / 2e-06 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT2G46870 44 / 1e-05 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT1G01030 42 / 7e-05 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT1G51120 41 / 0.0001 AP2_ERF AP2/B3 transcription factor family protein (.1) AT3G61970 40 / 0.0002 B3 NGA2 NGATHA2, AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G221600 [exp] 123 / 3e-37 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.011G005200 [exp] 92 / 5e-25 AT4G01500 50 / 3e-08 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.015G126301 [exp] 94 / 2e-24 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.003G021250 [exp] 88 / 3e-23 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.004G219450 [exp] 88 / 4e-23 AT1G13260 45 / 4e-06 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Potri.003G010700 [exp] 87 / 1e-22 AT1G68840 55 / 1e-09 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Potri.003G013601 [exp] 87 / 1e-22 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.004G011000 [exp] 86 / 2e-22 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.003G011132 [exp] 85 / 5e-22 AT1G68840 44 / 7e-06 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021707 [exp] 41 / 0.0001 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10026212 [exp] 40 / 0.0002 AT1G51120 150 / 4e-44 AP2/B3 transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G221300.1 pacid=42796365 polypeptide=Potri.004G221300.1.p locus=Potri.004G221300 ID=Potri.004G221300.1.v4.1 annot-version=v4.1 ATGTCCCAGGTTCTTGTCTCAGTTAGATTTCTCAAAACTTGGGCAAAAGCTAGCTTAATCTCTCCCGAAAACCAACTAGAAATGGAGCACCTTTTTACTA AACAGCTTTCTCCGACTGATACAACACATAGGCTGACAATTCCTGCGGCCAATTTGGGAGATTTCGAGTTTCCCATGGGAGAGCATGCAATTGACATTGA GGCAACAGACACTATTGAGAGACAGTGGATCTTCAGGCTGTCGATTCGCCGGGAAAATAATCCAAACCCAAGACCAGTATTCACCGGTCAGTGGACTCAA TTTGTGAACGAAAAAGGTCTCAGGGTGGGGGATAGGATTATTTTCTCTAGGCAACAAGTTGAAGGTAATGGCGTGCAATACAGCATCAGGGCTGAGAGAA GAATATTCAATTATTGGGTTAATGTTGAGTGA
AA sequence Show only first row Show all	>Potri.004G221300.1 pacid=42796365 polypeptide=Potri.004G221300.1.p locus=Potri.004G221300 ID=Potri.004G221300.1.v4.1 annot-version=v4.1 MSQVLVSVRFLKTWAKASLISPENQLEMEHLFTKQLSPTDTTHRLTIPAANLGDFEFPMGEHAIDIEATDTIERQWIFRLSIRRENNPNPRPVFTGQWTQ FVNEKGLRVGDRIIFSRQQVEGNGVQYSIRAERRIFNYWVNVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.004G221300 [exp]	0	1
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Potri.003G010700 [exp]	1.41	0.9974
					Potri.011G005400 [exp]	4.58	0.9969
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.004G219450 [exp]	8.66	0.9952
					Potri.003G010565 [exp]	13.03	0.9962
					Potri.011G005500 [exp]	14.00	0.9964
					Potri.003G010598 [exp]	16.49	0.9959
AT3G20180			Copper transport protein famil...		Potri.001G378700 [exp]	17.46	0.9939
					Potri.015G034166 [exp]	19.13	0.9961
AT2G21100			Disease resistance-responsive ...		Potri.001G214600 [exp]	19.44	0.9955
					Potri.003G010532 [exp]	24.73	0.9959

Compare expression of checked genes

Potri.004G221300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.